Jatropha Genome Database

JcCA0148631.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0148631.20 - phase: 2 /partial
         (328 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013950 conserved hypothetical protein                          210   4e-54

>30147.m013950 conserved hypothetical protein
          Length = 1608

 Score =  210 bits (106), Expect = 4e-54
 Identities = 259/310 (83%)
 Strand = Plus / Plus

                                                                        
Query: 1    agagattgaaaatgaagatgaactcaagactggaccttacagtgcacgaactaatgagca 60
            |||||||||||| ||||||||| ||||| ||||||||||  || ||| || |||||||||
Sbjct: 1278 agagattgaaaacgaagatgaagtcaaggctggaccttatggtacacaaagtaatgagca 1337

                                                                        
Query: 61   gccaattcagcgtgcatgggttcctccacagccaccgcctgttgcaatgcctgaagcagc 120
             ||| ||| |||||||||||| ||||| |||||||| |||||||| ||| ||||||||||
Sbjct: 1338 accagttcggcgtgcatgggtccctccccagccaccccctgttgctatggctgaagcagc 1397

                                                                        
Query: 121  agaagccattcgacggccaaaaccatcagttcagaaggaacagttggctgatgatcagcc 180
            ||||||||| |||||||||||||||||||||||||||||||| | ||  || || ||| |
Sbjct: 1398 agaagccatccgacggccaaaaccatcagttcagaaggaacaatcgggagaggagcagtc 1457

                                                                        
Query: 181  tgtgtctcattccacagacgcaacggatgagttgcagaggataacaaaaatatctgaatc 240
                |||| |   ||||| ||||| ||||| ||||||| ||||||||||||| |||||||
Sbjct: 1458 caaatctcttcaaacagatgcaacagatgaattgcagaagataacaaaaatagctgaatc 1517

                                                                        
Query: 241  aggtggtgcagtggagatcaacggtggggaatcagaggtaaactcaagcgagataaagga 300
             || ||||   |||  ||||| | ||||| ||||||| |||||||||  |||||||||||
Sbjct: 1518 tggaggtggcatgggaatcaatgatgggggatcagagctaaactcaaatgagataaagga 1577

                      
Query: 301  agatcaagaa 310
            ||| ||||||
Sbjct: 1578 agagcaagaa 1587