Jatropha Genome Database

JcCA0148271.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0148271.10 + phase: 0 /pseudo/partial
         (492 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28094.m000175 strictosidine synthase, putative                        396   e-110

>28094.m000175 strictosidine synthase, putative
          Length = 1119

 Score =  396 bits (200), Expect = e-110
 Identities = 400/463 (86%), Gaps = 4/463 (0%)
 Strand = Plus / Plus

                                                                        
Query: 20   ttttgccaatggtgtagcactgagcaaagacaactcctttgtgctggtggcagaaaccac 79
            ||||||||||||||||||| ||||||| |||   ||||||||||| || |||||||||| 
Sbjct: 651  ttttgccaatggtgtagcattgagcaaggaccggtcctttgtgctagtagcagaaaccag 710

                                                                        
Query: 80   tacttgtcaagtttttaaggttttttggcttcatggtcctgacgctggaaaggtcgatgt 139
            |||||||||| |||  ||||||||  |||||||||| ||| | ||||||||||| |||||
Sbjct: 711  tacttgtcaaatttc-aaggtttt--ggcttcatggccctaatgctggaaaggttgatgt 767

                                                                        
Query: 140  ttttcgcagtgcttccgggatttccagataatatcagaagaaactcgaaaggagagtttt 199
            ||| |||   |||||| ||||||||||| || || |||||||| || ||||| |||||||
Sbjct: 768  ttt-cgcgaagcttccaggatttccagacaacattagaagaaattcaaaaggggagtttt 826

                                                                        
Query: 200  gggtagctttacatgccaagaaagggctttttgcaaagttggttctttctaactcatgga 259
            |||||||||| ||||||||  ||||  || ||||||||||||  ||||| || |||||||
Sbjct: 827  gggtagctttgcatgccaaagaaggatttcttgcaaagttggcactttcaaattcatgga 886

                                                                        
Query: 260  ttggaaagacattgttaaaacttccacttagctttaagcaactgcattcactgttggtag 319
            |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||
Sbjct: 887  ttggaaagacattgttgaaatttccacttagctttaagcaactgcattcattgttagtag 946

                                                                        
Query: 320  gagggaaacctcatgcaactgctataaagctgagtgaggatgggaaaattctggaagttt 379
            ||||||| || ||||||||||||||||| ||||||| |||||| |||||| |  ||||| 
Sbjct: 947  gagggaagccacatgcaactgctataaaactgagtggggatggtaaaattgtacaagttc 1006

                                                                        
Query: 380  tagaagattgtgagggaaagaaattgaggtttattagtgaagtggaagagaaggatggta 439
            | ||||||||||| || |||| |||||||||||| ||||||||||||||||||||||| |
Sbjct: 1007 tggaagattgtgatggcaagagattgaggtttatcagtgaagtggaagagaaggatggga 1066

                                                       
Query: 440  agttgttgattgggtcggtattgatgcctttccttggtgttta 482
            |||| | |||||| ||||| |||||||||||||| ||| ||||
Sbjct: 1067 agttatggattggatcggttttgatgcctttcctaggtattta 1109