Jatropha Genome Database

JcCA0147251.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0147251.30 - phase: 0 /TE/partial
         (252 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001222 retinoblastoma-binding protein, putative                299   4e-81
27785.m000034 retinoblastoma-binding protein, putative                 50   6e-06

>29709.m001222 retinoblastoma-binding protein, putative
          Length = 1275

 Score =  299 bits (151), Expect = 4e-81
 Identities = 202/219 (92%)
 Strand = Plus / Plus

                                                                        
Query: 23   gcaggattgatgaagaacagacaccagaagatgctgaagatggtcctccagaactgcttt 82
            ||||||| ||||||||||||||||| || |||||||||||||||||||||||  ||||||
Sbjct: 1043 gcaggatcgatgaagaacagacacctgaggatgctgaagatggtcctccagagttgcttt 1102

                                                                        
Query: 83   ttattcatggtggccacacaagtaaaatatcagatttttcatggaatccctgtgaagact 142
            ||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 1103 ttattcatggtggtcacacaagtaaaatatcggatttttcgtggaatccttgtgaggact 1162

                                                                        
Query: 143  gggttattgcaagtgtggccgaagataatatccttcagatatggcaaatggaagagaata 202
            |||||||||||||||| || |||||||| || |||||||||||||| |||| ||||||||
Sbjct: 1163 gggttattgcaagtgtagctgaagataacatacttcagatatggcagatggcagagaata 1222

                                                   
Query: 203  tctaccatgatgaagatgacatgcctggggatgaatcca 241
            |||||||||||||||||||||| ||||||||||||||||
Sbjct: 1223 tctaccatgatgaagatgacatacctggggatgaatcca 1261


>27785.m000034 retinoblastoma-binding protein, putative
          Length = 1248

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 51   agatgctgaagatggtcctccagaactgctttt 83
            ||||||||||||||| ||||||||||| |||||
Sbjct: 1050 agatgctgaagatggccctccagaacttctttt 1082