Jatropha Genome Database

JcCA0147251.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0147251.20 + phase: 0 
         (537 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001221 conserved hypothetical protein                          226   1e-58

>29709.m001221 conserved hypothetical protein
          Length = 456

 Score =  226 bits (114), Expect = 1e-58
 Identities = 240/282 (85%)
 Strand = Plus / Plus

                                                                       
Query: 148 ctttctctcgctaagccatcttgggtggtcaaaactgagtcaaatgtgcggaaggaaata 207
           ||||||||| | |||||||||||| | |||| ||||||||| ||||| || || ||||||
Sbjct: 133 ctttctctctcgaagccatcttggatcgtcagaactgagtcgaatgtccgcaaagaaata 192

                                                                       
Query: 208 aggaagaaacctaatccgccatgcgtggtttgcaagggcagtggacgagtcgattgtcac 267
           || ||||||||| |||| | ||| ||||||||  | || | ||||||||| ||||| |||
Sbjct: 193 agaaagaaacctcatccccaatgtgtggtttgtcacggaactggacgagttgattgccac 252

                                                                       
Query: 268 tattgttctggaaaaggccggacaaaccttgttcatttaccaatgcttcctaaaggggaa 327
             |||||| ||   ||| || |||||  || |||||||| |||||||||| |||||||||
Sbjct: 253 ctttgttccggtctaggacgaacaaattttattcatttagcaatgcttccaaaaggggaa 312

                                                                       
Query: 328 tggccaaaatggtgtaggacttgcggcggtagtggcctcagctactgctcccgttgcctt 387
           ||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||
Sbjct: 313 tggccaaaatggtgtaggacttgtgggggcagtggcctcagctactgctcccgttgtctt 372

                                                     
Query: 388 ggcacgggagagtataggtatataatgggattccacttcatg 429
           || || |||||||||||||| |||||||| ||||||||||||
Sbjct: 373 ggtaccggagagtataggtacataatgggcttccacttcatg 414