Jatropha Genome Database

JcCA0147251.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0147251.10 + phase: 0 /pseudo/partial
         (1323 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30869.m000035 multidrug resistance-associated protein 2, 6 (mrp2...   547   e-155
29709.m001220 multidrug resistance-associated protein 2, 6 (mrp2...   337   1e-91
29986.m001594 multidrug resistance-associated protein 2, 6 (mrp2...    52   9e-06

>30869.m000035 multidrug resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative
          Length = 3717

 Score =  547 bits (276), Expect = e-155
 Identities = 429/480 (89%)
 Strand = Plus / Plus

                                                                        
Query: 103  tacatcccaacagcaagagaactggctcgcttagcaggaatacagagagctccaattctt 162
            ||||| |||||||| |||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct: 3214 tacataccaacagctagagaattggcccgcttggcaggaatacagagagctccaattctt 3273

                                                                        
Query: 163  caccactttgcagaatcattagcaggtgctgcaacaattcgtgcttttaatcaagaagat 222
            |||||||||||||| ||| ||||||| || || || |||||||||||| |||||||||| 
Sbjct: 3274 caccactttgcagagtcactagcaggagcagccacgattcgtgcttttgatcaagaagac 3333

                                                                        
Query: 223  cgttttattgaagcaaaccttgaccttatagacagccactcaaggccttggtttcataat 282
            ||||||||| ||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 3334 cgttttattaaagcaaaccttgatcttatagacagccactcaagaccatggtttcataat 3393

                                                                        
Query: 283  atgtcagccatggaatggctttctttcagattgaatttactgtccaattttgtatttgcc 342
             | ||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||| 
Sbjct: 3394 gtatcagcaatggaatggctttcgttcagattgaatctactgtccaattttgtgtttgca 3453

                                                                        
Query: 343  ttctcactggtcttgctggtgacccttcctgaaggaataatcaacccaagcattgcagga 402
            |||||| ||||  ||||||| || |||||||||||||||||||  |||| ||||||||||
Sbjct: 3454 ttctcattggttgtgctggtaacacttcctgaaggaataatcagtccaaccattgcagga 3513

                                                                        
Query: 403  ttggcagtaacatatgggataaatttgaatgttttacaagcttcagtcatatggagcatg 462
            |||||||| |||||||| || ||||| |||||| | ||||| ||||| ||||||| ||| 
Sbjct: 3514 ttggcagttacatatggaattaatttaaatgttctgcaagcatcagttatatggaacatt 3573

                                                                        
Query: 463  tgcaatgcagaaaaccaaatgatttctgtagaaagaattcttcagtactcaaatataaca 522
            |||||||| |||||| | ||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 3574 tgcaatgctgaaaacaagatgatctctgtagaaagaattcttcagtactcaaatataaaa 3633

                                                                        
Query: 523  agtgaagcaccccttgtggttgaagagtgcagaccttcagacaactggccagaagtagga 582
            || ||||||||||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct: 3634 agcgaagcaccccttgtggttgaagagtgcagacctccaaacaactggcctgaagtagga 3693


>29709.m001220 multidrug resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative
          Length = 360

 Score =  337 bits (170), Expect = 1e-91
 Identities = 296/338 (87%)
 Strand = Plus / Plus

                                                                        
Query: 974  cagtgattgaaaatggagaaaactggagtgcggggcagagacagttattctgtctgggaa 1033
            |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 5    cagtgattgaaaatggagaaaactggagtgtggggcagagacagttattgtgtctgggaa 64

                                                                        
Query: 1034 gagccctactaaagaaaagcagcatccttgtgctggatgaagcaacagcatcagtcgatt 1093
            ||||||| ||||||||||||||||| || ||| |||||||||||||||| || || ||||
Sbjct: 65   gagccctgctaaagaaaagcagcatactggtgatggatgaagcaacagcgtcggtggatt 124

                                                                        
Query: 1094 cagcaacagatggggtgatacagaagatcattagccaagagttcaaagataggacagtgg 1153
            | ||||||||||| || |||||||| || ||||||||||||||||||||||| || ||||
Sbjct: 125  cggcaacagatggagtcatacagaaaataattagccaagagttcaaagatagaacggtgg 184

                                                                        
Query: 1154 tgacaatagctcacagaatccacacggttatagacagtgatcttattttggtccttagtg 1213
            ||||||||||||||||||||||||| || ||||| || |||||  | ||||| ||||| |
Sbjct: 185  tgacaatagctcacagaatccacacagtaatagaaagcgatctcgtattggttcttagcg 244

                                                                        
Query: 1214 atggaaggattgcggagtatgacacgccggtaaaactgctagaaagagaggattctttct 1273
            |||||||  |||| |||||||| ||||||| ||  |||||  || | || ||||| ||||
Sbjct: 245  atggaagagttgcagagtatgatacgccggaaaggctgctgcaacgggaagattcattct 304

                                                  
Query: 1274 tctcaaaacttataaaagaatactcgatgaggtcacag 1311
            | |||||||| || ||||||||||| ||||||||||||
Sbjct: 305  tttcaaaactcatcaaagaatactccatgaggtcacag 342


>29986.m001594 multidrug resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative
          Length = 4521

 Score = 52.0 bits (26), Expect = 9e-06
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                      
Query: 1067 tggatgaagcaacagcatcagtcgattcagcaacagatggggtgatacagaagatcat 1124
            ||||||| || ||||| ||||||||||||  ||| |||||||| || |||||||||||
Sbjct: 4271 tggatgaggcgacagcttcagtcgattcacaaactgatggggtaattcagaagatcat 4328