Jatropha Genome Database

JcCA0146281.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0146281.20 + phase: 0 
         (270 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29742.m001387 conserved hypothetical protein                          121   2e-27

>29742.m001387 conserved hypothetical protein
          Length = 267

 Score =  121 bits (61), Expect = 2e-27
 Identities = 150/179 (83%), Gaps = 3/179 (1%)
 Strand = Plus / Plus

                                                                       
Query: 40  tcatgcgataagcttgatcgagtggccaattgggtgggaagcaacgtggcctccgcattc 99
           |||||||||||||| ||||| || ||||  |||||||| |||||||| |||||||| || 
Sbjct: 37  tcatgcgataagctggatcgggtagccagctgggtggggagcaacgtagcctccgctttt 96

                                                                       
Query: 100 ttcgcctcccttgaacggtgctcctgcatcaacctcaacaccgccgacctcgaagacgaa 159
           ||||| ||  | ||||| ||||||||||||||||||||||| |||||||  |||   || 
Sbjct: 97  ttcgcttcgttggaacgctgctcctgcatcaacctcaacactgccgaccctgaa---gat 153

                                                                      
Query: 160 gacgatgaaggggccaaggatcgacctcttatgctctgcaagcccactatccgcgacaa 218
           ||||| |||| ||| ||||| |||||||| ||||||| |||||||||  ||||||||||
Sbjct: 154 gacgacgaagaggctaaggaccgacctctcatgctctccaagcccaccgtccgcgacaa 212