Jatropha Genome Database

JcCA0145721.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0145721.10 + phase: 1 /partial
         (464 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003377 neurobeachin, putative                                  351   2e-96

>29889.m003377 neurobeachin, putative
          Length = 4728

 Score =  351 bits (177), Expect = 2e-96
 Identities = 313/362 (86%), Gaps = 16/362 (4%)
 Strand = Plus / Plus

                                                                        
Query: 1    catgtggatctgacaaaactcaggatgatggaacttttccttcaccatcttggattgcgg 60
            |||||||||||||||||||||  |  |||||||||||| | ||| |||| ||||||||  
Sbjct: 4217 catgtggatctgacaaaactccagcagatggaacttttgcatcatcatcgtggattgcat 4276

                                                                        
Query: 61   ctggactaagttctggtcattgcaggttatttgatttgcgaagtggaaatgttattgcct 120
            |||||||||||||||||||||||||  |||||||| || |||||||||||||| ||||||
Sbjct: 4277 ctggactaagttctggtcattgcagaatatttgatgtgagaagtggaaatgttgttgcct 4336

                                                                        
Query: 121  cttggagggctcatgatggatatgtaacaaagttggctgcaccagaggactatttgcttg 180
            ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 4337 cttggagggctcatgatggatatgttacaaagttggctgcaccagaggaccatttgcttg 4396

                                                                        
Query: 181  tttccagttctctagacaggactctgcgaatttgggaccttaga---------------- 224
            ||||||||||||| ||||||||||||||||||||||||||||||                
Sbjct: 4397 tttccagttctctcgacaggactctgcgaatttgggaccttagaaggaattggccaccac 4456

                                                                        
Query: 225  agcccactgtttttaaaggtcatacagatgggatatccagtttctctgtttggggtcaag 284
            |||||||||| ||||||||||||||||||||| ||||  |||||| ||| ||||| ||||
Sbjct: 4457 agcccactgtatttaaaggtcatacagatggggtatctggtttctgtgtatggggacaag 4516

                                                                        
Query: 285  atgttatttcgatttccaaaaataagattgggctttcaactttatccagatctgttgaag 344
            | |||||||| ||||||||||||||||| || ||||| ||||| || ||||||| |||||
Sbjct: 4517 acgttatttctatttccaaaaataagatcggcctttccactttgtctagatctgctgaag 4576

              
Query: 345  aa 346
            ||
Sbjct: 4577 aa 4578



 Score =  163 bits (82), Expect = 1e-39
 Identities = 109/118 (92%)
 Strand = Plus / Plus

                                                                        
Query: 343  agaaactatatgcagttgatcatggaatgaaaaatttgtctgtattatcaagtataagta 402
            ||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4604 agaaactctatgcagctgatcatggaatgaaaaatttgtcagtattatcaagtataagta 4663

                                                                      
Query: 403  ttttacccttctcgagattgtttgtagttggaacagaagatggttatttgagaatatg 460
            || |||| ||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 4664 ttctaccgttctcaagattgtttgttgttggaacagaagatgggtacttgagaatatg 4721