Jatropha Genome Database
- JcCA0143421.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0143421.10 - phase: 0
(1824 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29889.m003277 WD-repeat protein, putative 950 0.0
30076.m004662 WD-repeat protein, putative 226 4e-58
>29889.m003277 WD-repeat protein, putative
Length = 4560
Score = 950 bits (479), Expect = 0.0
Identities = 812/923 (87%)
Strand = Plus / Plus
Query: 832 tttgatcgctcagggagatatgtcattacaggttcagatgatcgccttgttaaaatctgg 891
|||||||| |||||||||||||| ||||| || || |||||||||||||| |||||||||
Sbjct: 778 tttgatcgatcagggagatatgttattactggctctgatgatcgccttgtaaaaatctgg 837
Query: 892 tccatggaaactgcattttgcttggccagctgtcgtggacatgaaggtgacattactgac 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tccatggaaactgcattttgcttggccagctgtcgtggacatgaaggtgacattactgac 897
Query: 952 ttggctgtgagttcaaacaatgccttggtggcttctgcttcaaatgattgtataattcga 1011
||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 898 ttggctgtgagctccaacaacactttggtggcttctgcttcaaatgattgtataattcgt 957
Query: 1012 gtgtggcgtttgccagatgggcttccaatatctattttacgtggacatactggagctgtc 1071
|||||||||||||||||||||||||| |||||| || | || ||||| ||||| |||||
Sbjct: 958 gtgtggcgtttgccagatgggcttccgatatctgttctgcggggacacactggcgctgtt 1017
Query: 1072 actgccattgcgtttagtccaaggcctggatctgtataccagcttctttcatcatctgat 1131
|||||||| || |||||||| || || |||||||| |||||||| || || |||||||||
Sbjct: 1018 actgccatagcatttagtcctagaccaggatctgtgtaccagctcctctcgtcatctgat 1077
Query: 1132 gatggaacatgtaggatctgggatgctagatattccaacttcagtccacggatatatatt 1191
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1078 gatggaacatgtaggatctgggatgctagatattccaacttcagtccacggttatatatt 1137
Query: 1192 cctaggccttcagattcattagctgggaagaacagtggtctatcctcaagtagtggtctg 1251
|||||||||| |||||| |||||||| ||||| || ||| ||||||||| |||||||
Sbjct: 1138 cctaggcctttagattccttagctggaaagaatagcggtgcatcctcaagcagtggtcct 1197
Query: 1252 cagagccatcaaatattttgttgtgcatttaatgctaatggaactgtgtttgtcactggt 1311
|||| |||||||||||||| || || || ||||||||||| |||||||||||||||||
Sbjct: 1198 cagactcatcaaatattttgctgcgcgttcaatgctaatgggactgtgtttgtcactgga 1257
Query: 1312 agctctgacaatcttgctagggtatggaatgcttgtaagccaaacagtgatgattcggac 1371
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||
Sbjct: 1258 agctctgacaatcttgctagggtatggaatgcttgtaaatcaaacatggatgattcagac 1317
Query: 1372 caacctaatcatgagatagacgtgctatccggtcatgagaatgacgtcaactatgttcag 1431
||||| |||||||||||||| || |||| || |||| |||||| ||||| |||||||||
Sbjct: 1318 caaccaaatcatgagatagatgtattatctggccatgggaatgatgtcaattatgttcag 1377
Query: 1432 tttagtggatgtgctgtggcacctaggttttctctcactgatagctcaaaggaagagaat 1491
|||||||| ||||| ||||| |||| || |||||| |||| ||||| ||||||||||||
Sbjct: 1378 tttagtggttgtgcggtggcgtctagattgtctctctctgacagctcgaaggaagagaat 1437
Query: 1492 gctccaaaatttagaaattcatggttttctcacgacaacatagttacctgctctcgagat 1551
| ||||||||||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 1438 gttccaaaatttagaaactcatggttttctcatgataacatagtgacctgttctcgagat 1497
Query: 1552 ggcagtgcaattatttggattccaagaccacgtagatcacatgggaaagtaggccgttgg 1611
||||||||||| || ||| |||||| | |||||||||| |||||||||| ||||| |||
Sbjct: 1498 ggcagtgcaatgatatgggttccaaaatcacgtagatctcatgggaaagctggccgctgg 1557
Query: 1612 actcgacattaccacctgaaagttcctccaccaccaatgcctccccaacctccccgagga 1671
|||||| || || |||||| ||||| | || ||| |||| || |||||||| |||||
Sbjct: 1558 actcgattatatcaactgaaaattcctgctcctccagtgccacctcaacctccaagagga 1617
Query: 1672 ggtccgcgtcaaagaattctaccaactcctcgtggtgtgaatatgatcgtgtggagcttg 1731
||||| ||||| |||||| ||||||||||||| ||||| || |||||| | |||||| |
Sbjct: 1618 ggtcctcgtcagagaattttaccaactcctcgaggtgtcaacatgatcatatggagccta 1677
Query: 1732 gataatcgttttgtcctggctgc 1754
||||||||||||||||| |||||
Sbjct: 1678 gataatcgttttgtccttgctgc 1700
Score = 285 bits (144), Expect = 5e-76
Identities = 331/398 (83%), Gaps = 12/398 (3%)
Strand = Plus / Plus
Query: 1 atggctctccggaagtatattccttcagctgatgcaccttctgttggtatgaagcctttg 60
|||||||| |||||||| |||||||||| ||||||||||||| |||| ||||||||||||
Sbjct: 1 atggctctgcggaagtacattccttcagatgatgcaccttctcttggaatgaagcctttg 60
Query: 61 aannnnnnnagtaaggtgcatgagaatgctcaacatgcagatccagagacaacagtggag 120
| | |||| |||||||||| |||| |||||||| ||||||||| ||||
Sbjct: 61 agattttctaagaaggcacatgagaatggtcaagatgcagatgcagagacaagagtgcca 120
Query: 121 cctgatgtggatgttgacctcagagaagtttatttcttaattatgcatttcctttcagct 180
| |||||||||| ||||||| |||||||| || ||||| ||||||||||| |||||||||
Sbjct: 121 catgatgtggatattgaccttagagaagtgtacttcttgattatgcattttctttcagct 180
Query: 181 ggaccatgtcatagaacatatggacaattttggaatgaacttctcgaacatcaactacta 240
|| |||||||| | ||||||||||| || ||||| |||||||| ||||||||||| |
Sbjct: 181 gggccatgtcaccggacatatggacagttctggaacgaacttcttgaacatcaacttttg 240
Query: 241 cctagaagatatcatgcttggtattcaaggaa------------tggagatgaaaatgat 288
||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 cctaggagatatcatgcttggtattcaaggaatggggcacatagtggagatgaaaatgat 300
Query: 289 gatggtctatcattcccattaagttacactaagttggtggaaaggtacccgcacattgag 348
|||||| |||||||||||||||||| | |||||||||||| ||||| || || | |||
Sbjct: 301 gatggtgcatcattcccattaagttataataagttggtggagaggtatcctcatgtggag 360
Query: 349 aaggatcacttggtaaagcttttgaagcaattattact 386
||||||||||||||||||||||||||||| |||||||
Sbjct: 361 aaggatcacttggtaaagcttttgaagcagctattact 398
Score = 188 bits (95), Expect = 8e-47
Identities = 248/299 (82%)
Strand = Plus / Plus
Query: 429 tctaaatgctgctgttgttcctacacttatgggaacaggatcattttcacttttgagcaa 488
||||||||||||| ||||||||||||| ||||||| ||| | |||||||||||||| |
Sbjct: 474 tctaaatgctgctcatgttcctacacttttgggaacgggagcgttttcacttttgagtga 533
Query: 489 tgatagagatgcggaaaaagcccaagtaaatcatccccctcttcatatgcgatggcctca 548
||||| ||| || | ||| ||||| || ||||| ||| |||||||||||||||||
Sbjct: 534 tgataaagacaagggagaagatcaagtcaagcatcctcctgcccatatgcgatggcctca 593
Query: 549 tatgcgcgctgaccaggtccgtggactgggtttgagagaaattgggggtggtttttcaag 608
|||| ||||| ||||| || || ||| ||||||||||||| |||||||||||| ||||
Sbjct: 594 tatgtctgctgatcaggttcgagggctgagtttgagagaaatcgggggtggttttccaag 653
Query: 609 acaccatcgtgcaccatctgtccgtgcagcatgctacactattgcaaagccttcaactat 668
|| || |||||||| ||| | |||||||| || || ||||||||||| || |||||||
Sbjct: 654 gcatcaccgtgcaccttctattcgtgcagcttgttatactattgcaaaaccagcaactat 713
Query: 669 ggtgcaaaaaatgcaaaatatcaagaggctaagaggacaccggaatgctgtctattgtg 727
||| || |||||||||||||| ||||||||| | ||||| || ||||||||||||||||
Sbjct: 714 ggtacagaaaatgcaaaatattaagaggctacgtggacatcgaaatgctgtctattgtg 772
>30076.m004662 WD-repeat protein, putative
Length = 4641
Score = 226 bits (114), Expect = 4e-58
Identities = 282/338 (83%)
Strand = Plus / Plus
Query: 826 gctatttttgatcgctcagggagatatgtcattacaggttcagatgatcgccttgttaaa 885
||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| ||
Sbjct: 706 gctatatttgaccgctcagggaggtatgtaattactggttcagatgatcgacttgtcaag 765
Query: 886 atctggtccatggaaactgcattttgcttggccagctgtcgtggacatgaaggtgacatt 945
|| ||||| ||||||||||||||||||||||| ||||| || || |||||||||||||||
Sbjct: 766 atttggtcaatggaaactgcattttgcttggctagctgccgagggcatgaaggtgacatt 825
Query: 946 actgacttggctgtgagttcaaacaatgccttggtggcttctgcttcaaatgattgtata 1005
|||||| ||||||| |||||||||||||| | ||||| || ||||| || || | | |
Sbjct: 826 actgacctggctgtaagttcaaacaatgctctagtggcatccgcttctaacgactttgtt 885
Query: 1006 attcgagtgtggcgtttgccagatgggcttccaatatctattttacgtggacatactgga 1065
|| ||||| ||||| |||||||||||| | ||||| || | || || || || || ||
Sbjct: 886 atccgagtatggcgcttgccagatgggttgccaatttcagtcttgcgagggcacaccggt 945
Query: 1066 gctgtcactgccattgcgtttagtccaaggcctggatctgtataccagcttctttcatca 1125
||||| ||||||||||| |||||||| |||||| ||||||||||||||| | || |||
Sbjct: 946 gctgttactgccattgcatttagtcccaggcctaactctgtataccagcttttatcgtca 1005
Query: 1126 tctgatgatggaacatgtaggatctgggatgctagata 1163
|| |||||||||| ||| | |||||||||||||||||
Sbjct: 1006 tcggatgatggaagttgtcgaatctgggatgctagata 1043
Score = 135 bits (68), Expect = 1e-30
Identities = 119/136 (87%)
Strand = Plus / Plus
Query: 1627 ctgaaagttcctccaccaccaatgcctccccaacctccccgaggaggtccgcgtcaaaga 1686
||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||| |||
Sbjct: 1522 ctgaaagttccaccaccacctttgcctccgcaacctccccgaggaggtccacgtcagaga 1581
Query: 1687 attctaccaactcctcgtggtgtgaatatgatcgtgtggagcttggataatcgttttgtc 1746
||||| |||||||| ||||| || |||||||| || ||||||||||||||||| |||||
Sbjct: 1582 attctcccaactccacgtggagttaatatgattgtttggagcttggataatcgctttgtg 1641
Query: 1747 ctggctgctattatgg 1762
|| || ||||| ||||
Sbjct: 1642 cttgcagctataatgg 1657
Score = 79.8 bits (40), Expect = 5e-14
Identities = 244/312 (78%)
Strand = Plus / Plus
Query: 1259 atcaaatattttgttgtgcatttaatgctaatggaactgtgtttgtcactggtagctctg 1318
|||| ||||| |||||||| | ||||| ||||| ||||| |||||||||||||||||||
Sbjct: 1154 atcagatattatgttgtgcttacaatgccaatggcactgtctttgtcactggtagctctg 1213
Query: 1319 acaatcttgctagggtatggaatgcttgtaagccaaacagtgatgattcggaccaaccta 1378
||| | ||| ||||| |||| ||| ||||| | | | ||||| || || ||||| |
Sbjct: 1214 acacttatgcaagggtttggagtgcctgtaaatctagtacagatgagtctgatcaaccga 1273
Query: 1379 atcatgagatagacgtgctatccggtcatgagaatgacgtcaactatgttcagtttagtg 1438
| ||||||| || || |||| |||||||||||||| ||||| |||||||| || || |
Sbjct: 1274 tttatgagattgatgtattatctggtcatgagaatgatgtcaattatgttcaattcagcg 1333
Query: 1439 gatgtgctgtggcacctaggttttctctcactgatagctcaaaggaagagaatgctccaa 1498
| ||||||||||| | || | ||| || |||| || ||||| || || ||| |
Sbjct: 1334 gctgtgctgtggcttcaagatcttcattctctgacgccttgaaggaggataacattccca 1393
Query: 1499 aatttagaaattcatggttttctcacgacaacatagttacctgctctcgagatggcagtg 1558
|||||| |||||| ||||| | ||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 1394 aatttaaaaattcctggttctgtcatgacaaaatagttacctgttctcgggatggtagtg 1453
Query: 1559 caattatttgga 1570
||||||| ||||
Sbjct: 1454 caattatatgga 1465
Score = 54.0 bits (27), Expect = 3e-06
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 211 tggaatgaacttctcgaacatcaactactacctagaagatatcatgcttggtattcaag 269
|||||||||||| | |||||| | || ||||| |||||||||||||| |||| ||||||
Sbjct: 181 tggaatgaacttttggaacatgagcttctaccaagaagatatcatgcatggttttcaag 239
Score = 54.0 bits (27), Expect = 3e-06
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 304 ccattaagttacactaagttggtggaaaggtacccgcacattgagaaggatcacttggta 363
||||||| ||||| ||| || ||||| ||||| || || || ||||| ||||| ||| ||
Sbjct: 286 ccattaaattacaataaattagtggagaggtatcctcatatagagaaagatcatttgata 345
Query: 364 aagcttttgaagcaa 378
|||||||||||||||
Sbjct: 346 aagcttttgaagcaa 360