Jatropha Genome Database

JcCA0143091.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0143091.30 + phase: 0 
         (576 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014489 conserved hypothetical protein                          234   5e-61

>30147.m014489 conserved hypothetical protein
          Length = 591

 Score =  234 bits (118), Expect = 5e-61
 Identities = 264/313 (84%), Gaps = 6/313 (1%)
 Strand = Plus / Plus

                                                                       
Query: 264 cggtgctggtggtgtcggtgttggtacttgtaatggtgctctcgatgaagcgaggtttcg 323
           |||| |||||| ||| || | ||||||  ||||||| ||||||||||||||  |||||||
Sbjct: 285 cggtactggtgttgttggcggtggtacaggtaatggagctctcgatgaagctcggtttcg 344

                                                                       
Query: 324 gtataagaattctgttgctgctcttcgtgaggtcctcgcggccattcctaattctcaaaa 383
           |||||| || || || ||||||||||||||||| || || || |||||||||||||| ||
Sbjct: 345 gtataaaaactccgtagctgctcttcgtgaggtacttgctgcgattcctaattctcataa 404

                                                                       
Query: 384 ggcaaaagcatttgaaaccacgaacagttcagcgtctccagcagatcatgctgaggttga 443
           ||||| | |||||||||| |      | ||| | ||||| |||||| | ||||| |||||
Sbjct: 405 ggcaatatcatttgaaacaa------gctcatcatctccggcagatgaagctgatgttga 458

                                                                       
Query: 444 gaaattggaagagcaagcctccaatctaagaaaggaacttgtaaacaaaaatgcgtgcct 503
           |||||| ||||||||||||||||||||||||||||||||| | ||||| ||||| |  ||
Sbjct: 459 gaaattagaagagcaagcctccaatctaagaaaggaacttttcaacaagaatgcatatct 518

                                                                       
Query: 504 gaagcttctcattgatcagttgcgagatcttattactgacatttccacatggcaaagtcc 563
            ||||||||||||||||| || ||||||||||||||||| || || || |||||||||||
Sbjct: 519 taagcttctcattgatcaattacgagatcttattactgatatatctacgtggcaaagtcc 578

                        
Query: 564 ttgctctgtttga 576
           |||||||||||||
Sbjct: 579 ttgctctgtttga 591



 Score =  123 bits (62), Expect = 1e-27
 Identities = 104/118 (88%)
 Strand = Plus / Plus

                                                                       
Query: 35  ccaaaacgacacaagagcttgcactcgaaggccaaaagcatctcgaagaaacaatccaag 94
           ||||||||||||||||| | ||| | ||||| ||||||||||| ||||||||||||||||
Sbjct: 35  ccaaaacgacacaagagttagcaatggaaggacaaaagcatctggaagaaacaatccaag 94

                                                                     
Query: 95  ctgcttaccagatcctttcttctatgaacgacgagctttgtaaccctaatttatggtc 152
           | || || || || || ||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 95  cagcatatcaaattctctcttcaatgaacgacgagctttgtaaccctactttatggtc 152