Jatropha Genome Database

JcCA0143091.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0143091.10 - phase: 0 
         (687 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014490 Thylakoid lumenal 17.9 kDa protein, chloroplast pr...   444   e-124

>30147.m014490 Thylakoid lumenal 17.9 kDa protein, chloroplast
           precursor, putative
          Length = 690

 Score =  444 bits (224), Expect = e-124
 Identities = 471/552 (85%), Gaps = 6/552 (1%)
 Strand = Plus / Plus

                                                                       
Query: 115 ccaaaaccaattctcctcactaacctactgtcattagctctgacagtgaccttaaattct 174
           ||||||||||||||| |||| || || || || |||||||| || || |||||||  |||
Sbjct: 115 ccaaaaccaattctcttcaccaatctgctctccttagctctaactgttaccttaagctct 174

                                                                       
Query: 175 ccattaccttctttggctatcccttctccgaattctctatct---tctcctgtcattccc 231
           ||||| ||||| ||||||||||||||||| || ||||| ||    |||||  |  |||| 
Sbjct: 175 ccattgccttccttggctatcccttctcccaactctctgtcagcatctcccttacttcct 234

                                                                       
Query: 232 ---accactccattttctcaatccaagaacttgatccttggaccagaagatgggaaaatt 288
              ||||||||||| ||||||||||||||||||  |  |||||  |||||||||||||||
Sbjct: 235 ccaaccactccattctctcaatccaagaacttggccactggactcgaagatgggaaaatt 294

                                                                       
Query: 289 aggccttgtccatccacaaatccaagttgtgtatcaacaaatccgaaatcttcatcattt 348
            ||||||||||||| || |||||||| ||| ||||||||||||||||| |||||  ||||
Sbjct: 295 cggccttgtccatctacgaatccaagctgtatatcaacaaatccgaaaacttcacaattt 354

                                                                       
Query: 349 gcattcccattgacaattcctgatgactccacagataatgcaattcagaaattgcaggaa 408
           ||||||||||||||||||||||  ||||| ||||| || |||||||||||||||||||||
Sbjct: 355 gcattcccattgacaattcctggagactcaacagagaacgcaattcagaaattgcaggaa 414

                                                                       
Query: 409 gcaatcttgaaaacacagagaaatgcaaaaattcaagtaattgaagatgctccaaatggt 468
           |||||| ||||||||||| ||||||| || ||||| || |||||| || | || || || 
Sbjct: 415 gcaatcctgaaaacacagggaaatgccaagattcaggtcattgaaaatacccctaacggg 474

                                                                       
Query: 469 acatatttacaagcagaagttgatggaggatttggcagagatgtgcttgaatttctggta 528
             |||||||||||| || ||||| |||||||||||  | ||||||||||||||| |||||
Sbjct: 475 caatatttacaagccgaggttgacggaggatttgggcgtgatgtgcttgaatttttggta 534

                                                                       
Query: 529 aaaggagacgtggttgcttataggtgtatggccacaaaagttacctatgtgtatcccttt 588
           |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| 
Sbjct: 535 aaaggagatgtggttgcttacaggtctatggccacaaaagttacctatgtgtatcccttc 594

                                                                       
Query: 589 actacagctttaggagattcaaaaggacaggaggaaagaatgaagaaaattatagagcaa 648
           ||||||||||| || ||||||||||||||||| ||||||||||||||||| || || |||
Sbjct: 595 actacagcttttggggattcaaaaggacaggaagaaagaatgaagaaaatcattgaccaa 654

                       
Query: 649 ttgggatggtat 660
           || || ||||||
Sbjct: 655 ttaggttggtat 666