Jatropha Genome Database

JcCA0142891.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0142891.20 - phase: 0 /pseudo/partial
         (210 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014102 transcription regulator, putative                       168   8e-42
29822.m003497 transcription regulator, putative                        54   3e-07

>30147.m014102 transcription regulator, putative
          Length = 276

 Score =  168 bits (85), Expect = 8e-42
 Identities = 133/149 (89%)
 Strand = Plus / Plus

                                                                       
Query: 62  aggtttcagcagccaaggtgttgcaagagacatgcaactacatcagaaacttgcacagag 121
           |||||||||| || ||||||||||| ||||| |||||||| ||||||| |||||||||||
Sbjct: 125 aggtttcagctgcgaaggtgttgcaggagacttgcaactatatcagaagcttgcacagag 184

                                                                       
Query: 122 aagtcgatgatctaagtgagaggctatctgagttattggcaactactgacactgctcaag 181
           |||| |||||||| || ||| |||| || ||| |||||||||||||||||||||| ||||
Sbjct: 185 aagttgatgatcttagcgagcggctctcagagctattggcaactactgacactgcccaag 244

                                        
Query: 182 ctgccataattaggaatttactaatgcaa 210
           |||| ||||||||||||||||| ||||||
Sbjct: 245 ctgctataattaggaatttacttatgcaa 273


>29822.m003497 transcription regulator, putative
          Length = 273

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 85  caagagacatgcaactacatcagaaacttgcacag 119
           |||||||| |||||||||||||| |||||||||||
Sbjct: 142 caagagacctgcaactacatcaggaacttgcacag 176