Jatropha Genome Database

JcCA0142871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0142871.10 - phase: 0 /pseudo/partial
         (605 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004687 conserved hypothetical protein                          365   e-100

>29848.m004687 conserved hypothetical protein
          Length = 1635

 Score =  365 bits (184), Expect = e-100
 Identities = 334/384 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttcgacgagagtaagtttgatgtgcaattgaagttatgggcacttagaatccctcgt 60
           ||||| ||||| ||||| |||||||||||| |||||||||||||| | ||||| ||||||
Sbjct: 1   atgttggacgaaagtaaatttgatgtgcaactgaagttatgggcattaagaatacctcgt 60

                                                                       
Query: 61  gagcactgcaaggttgctactcgcttactaaacggatacttgcttgataaggctcgtgtt 120
           || | |||||||  ||| ||||||||||| || ||||| ||||||||||||||||| |||
Sbjct: 61  gaactctgcaagactgcaactcgcttactgaatggatatttgcttgataaggctcgcgtt 120

                                                                       
Query: 121 aaacccattactgaagatcccacttgcgagaagaatcgttttatgattttatctgaaagg 180
           || || |||||||||||||| ||||  || |||||||||| | |||| |||||||||   
Sbjct: 121 aagcctattactgaagatcctacttctgaaaagaatcgttatttgatattatctgaagct 180

                                                                       
Query: 181 gttcaaaataccgatttgactgatattcctgttgaaaaacttgatgaactgaaaaagtta 240
           ||||||||||  ||||||| ||||||| | | ||||| | |||| ||| |||| || |||
Sbjct: 181 gttcaaaataatgatttgagtgatatttcagctgaaagaattgaggaattgaagaaatta 240

                                                                       
Query: 241 tgtgagattgaagtagttccttattccatgacacttggatattcttactggagtgcagat 300
           ||  |||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||
Sbjct: 241 tgcaagattgaagtagttccttattctatgacacttggatattcctactggggtgccgat 300

                                                                       
Query: 301 cacatattgaagcagatcctgcctcctggagtagagatcccttcatcttttgaaacaata 360
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 301 catatattgaagcagatcctgcctcctggagtcgagatcccttcatcttttgaaacaata 360

                                   
Query: 361 gttaagtattcaatttatgttgtc 384
           ||||||||| || |||||||||||
Sbjct: 361 gttaagtatccattttatgttgtc 384



 Score =  111 bits (56), Expect = 5e-24
 Identities = 71/76 (93%)
 Strand = Plus / Plus

                                                                       
Query: 499 atgtcatattgcccatctaaatatacatgatgaactgctaccgtacaagaatgttattgc 558
           |||||| ||||||||||| |||||||||||||||||||| || |||||| ||||||||||
Sbjct: 501 atgtcacattgcccatctgaatatacatgatgaactgcttccatacaaggatgttattgc 560

                           
Query: 559 taaggttatttatgat 574
           ||||||||||||||||
Sbjct: 561 taaggttatttatgat 576