Jatropha Genome Database
- JcCA0141551.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0141551.10 - phase: 2 /partial
(1930 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29889.m003301 phytochrome B, putative 2141 0.0
29693.m002076 phytochrome B, putative 98 2e-19
>29889.m003301 phytochrome B, putative
Length = 3426
Score = 2141 bits (1080), Expect = 0.0
Identities = 1695/1900 (89%)
Strand = Plus / Plus
Query: 1 aggtttaagcacagacagtttggctgatgctgggtaccctggggcagtatcacttggtga 60
|||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1494 aggtttgagcacagacagtttggctgatgctgggtaccctggggcagcattgcttggtga 1553
Query: 61 tgcagtttgcggcatggctgttgcttatatcactaagagggatttcttattttggttccg 120
||||||||| || |||||||| |||||||||||||| | |||||||||||| ||||||||
Sbjct: 1554 tgcagtttgtgggatggctgtcgcttatatcactaacaaggatttcttattctggttccg 1613
Query: 121 atctcacacagcgaaggagatcaaatggggtggtgcaaagcatcatccagaggacaagga 180
|||||||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 1614 gtctcacactgcaaaggagatcaaatggggtggcgcaaaacatcacccagaggacaagga 1673
Query: 181 cgatgggcagaggatgcatccacgctcttcattcaaggcattcttggaagtggtaaaaag 240
||| | ||||| |||||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct: 1674 tgatagtcagagaatgcatccgcgttcttccttcaaggcattcttggaagtggtaaagag 1733
Query: 241 ccgaagtataccatgggagaacgcagaaatggatgctattcattctttgcagcttattct 300
||| ||| |||||||||| || |||||||||||||||||||| ||| | |||||||||||
Sbjct: 1734 ccggagtttaccatgggataatgcagaaatggatgctattcactctcttcagcttattct 1793
Query: 301 tcgagactcatttagggatgctgaagcaaccaattctaaggctgttacaaatgcacagct 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 1794 tcgagactcatttagggatgctgaagcaaccaattctaaggctgtcgcaaatgcccagct 1853
Query: 361 tggagatctggagttgcaagggatggatgaactcagctcagttgcaagagaaatggttag 420
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1854 caggggtctggaattgcaagggatggatgaactcagctcagttgcaagagaaatggttag 1913
Query: 421 gttaatagagactgcaactgctccaatatttgctgttgatgctgatggccgcataaatgg 480
|||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct: 1914 gttaatagagactgcaactgctccaatatttgctgtagacattgatggctgcataaatgg 1973
Query: 481 gtggaatgcaaaggttgctgagttaacggggctttcagttgaggaagctatggggaagtc 540
|||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||
Sbjct: 1974 gtggaatgcaaaggttgctgagttgacagggctctcggttgaggaagctatgggaaagtc 2033
Query: 541 tttggttcatgatcttatttataaggaatacgaagaaactgttgacaagcttcttcatca 600
||||||||||||||||||||| ||||| | | |||||||||||||| ||||||||| ||
Sbjct: 2034 tttggttcatgatcttatttacaaggagtccaaagaaactgttgaccagcttcttcgtcg 2093
Query: 601 tgctttaagaggcgaagaagataagaatgtagagataaaaatgaggacatttggctccga 660
|||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||| |
Sbjct: 2094 tgctttaagaggtgaagaagataaaaatatagagataaagatgaggacatttggctttgg 2153
Query: 661 acatgaaaagaaggctgttttcgtagtggtgaatgcttgttctagcaaagattacatgaa 720
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 2154 acatgaaaagaaggccgtttttgtggtggtgaatgcttgttctagcaaagattacatgaa 2213
Query: 721 caatatagttggagtttgctttgttggtcaggatattactgatcaaaaagtggtaatgga 780
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2214 taacatagttggagtttgctttgttggtcaggatattactggtcaaaaagtggtaatgga 2273
Query: 781 caaattcatccatatcgaaggtgattacagggctattattcatagtcccaatcctttaat 840
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 2274 caaattcatccatatccaaggtgattacagggctatagttcatagtcccaatcctttgat 2333
Query: 841 acctccaatatttgcttcagatgaaaacacttgctgcttggagtggaacactgccatgga 900
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 2334 ccccccaatatttgcttcagatgagaacacttgttgcttggagtggaacactgccatgga 2393
Query: 901 aaagctcaccgggtggggccgaagtgaaattattgggaagatgctggttggggaggtttt 960
|||||||| ||||||| || | | |||||||||||||||||| |||| |||||||||||
Sbjct: 2394 gaagctcactgggtgggcccaaggggaaattattgggaagatgttggtgggggaggtttt 2453
Query: 961 tggcagttgctgtcggctcaagggccctgatgcattgaccaaatttatgattgtgttgca 1020
||||||||| ||||| |||||| |||| |||| || || | ||| |||||||| |||||
Sbjct: 2454 tggcagttgttgtcgcctcaagagccccgatgtgttaacaagattcatgattgtcttgca 2513
Query: 1021 caatgcaattggaggacaggatactgacaagtttccattttctttctttgaccggaatgg 1080
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 2514 caatgcaattggaggacaggacactgacaagtttccattttccttctttgataagaatgg 2573
Query: 1081 aaaattcatgcaagctcttttgacagcaaacaagagattaaatatggatggacagattat 1140
|||| | |||||||||||||||| || | |||||| | ||||||||||| || |||||
Sbjct: 2574 aaaagttgtgcaagctcttttgacggctagcaagagggtcaatatggatggccaaattat 2633
Query: 1141 tggagccttctgcttcttgcagattgcaagtcctgagttacaacaagctttgaaagtcca 1200
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 2634 aggagccttctgcttcttgcagattgcaagtcctgagttgcaacaagctttgaaagccca 2693
Query: 1201 gaggcaacaggagagaaaaacctttacaagaatgaaagagttggcttatatttgccagga 1260
|||||||||||||| ||| ||||| ||||||||||||||||| || |||||||||||
Sbjct: 2694 gaggcaacaggagaaaaagggatttactagaatgaaagagttggcatacatttgccagga 2753
Query: 1261 aataaagaatcctctaagcggtatacggtttacaaactcacttttggaggcaacagactt 1320
||||||||| ||| |||| |||||||||||||||||||| ||||||||||| || ||| |
Sbjct: 2754 aataaagaaccctttaagtggtatacggtttacaaactctcttttggaggctacggacct 2813
Query: 1321 gaccgaggtccaaaagcagtttcttgaaacgagtgctgcttgtgagaagcagatgtttaa 1380
||| |||| |||||||||||||||||||| |||||||||||||| |||||||| || ||
Sbjct: 2814 gactgaggatcaaaagcagtttcttgaaactagtgctgcttgtgaaaagcagatcttaaa 2873
Query: 1381 gatcattcgagatgttgatctggagagcattgaagatggttcactggagcttgagaaggc 1440
||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct: 2874 gatcattcgagatgttgatctagagagcattgaggatggttcattggagcttgagaaggg 2933
Query: 1441 cgaatttttcattgggaatgtcatagatgctgtagttagccaagtgatgttactgctgag 1500
||||| || |||| | ||||||| ||||||| ||||||||||| |||||| |||||||
Sbjct: 2934 agaattcttacttggaagtgtcataaatgctgttgttagccaagtcatgttattgctgag 2993
Query: 1501 ggaaagaaatctacaattgattcgtgatattccagaggaagtaaaatctctggctgtata 1560
|||||||||||||||||||||||||||||||||||| ||| ||||| || | ||||||||
Sbjct: 2994 ggaaagaaatctacaattgattcgtgatattccagacgaaataaaaactttagctgtata 3053
Query: 1561 cggtgatcaagtaagaattcaacaggtgttggctgatttcttgttgaatatggttcgttg 1620
|| ||||| || || ||||||||||| ||||||||||||||||||| ||||| || ||
Sbjct: 3054 tggcgatcaggtgaggattcaacaggtactggctgatttcttgttgaacatggtacgatg 3113
Query: 1621 tgcaccatcttcagaaggttgggtagagattcatgtttgcccaaaactgaagcagacctc 1680
||||||||||||||| || |||||||||||||| ||| |||| ||||||||| | | |
Sbjct: 3114 tgcaccatcttcagatggatgggtagagattcacgttcatccaacactgaagcaaatcac 3173
Query: 1681 cgatgggctatctgttgtgcatatggaattcaggatggtttgccccggtgaaggtcttcc 1740
|| || || |||| |||||| ||||||||||||||||| || ||||||||||||||
Sbjct: 3174 tgaaggactcactgtaatgcatacagaattcaggatggtttgtcctggtgaaggtcttcc 3233
Query: 1741 tcctgaactagtccaggacatgttccacagctgccgatggacgactcaagaaggcctagg 1800
|||||| |||| || ||||||||||||||| | |||||||| |||||||||| |||||
Sbjct: 3234 ccctgaattagttcaagacatgttccacagcagtcgatggacatctcaagaaggtctagg 3293
Query: 1801 actcagtatgtgcaggaaaattttgaagcttatgcaaggtgaagtccaatacatcagaga 1860
|| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3294 gcttagcatgtgcaggaagattttgaagcttatgcaaggtgaagtccagtacatcagaga 3353
Query: 1861 gtcagaaagatgttatttcttagttatcctcgatcttccc 1900
||| ||||| ||||||||||||||| |||| |||||||||
Sbjct: 3354 gtcggaaaggtgttatttcttagttgtccttgatcttccc 3393
>29693.m002076 phytochrome B, putative
Length = 3396
Score = 97.6 bits (49), Expect = 2e-19
Identities = 214/269 (79%)
Strand = Plus / Plus
Query: 26 gatgctgggtaccctggggcagtatcacttggtgatgcagtttgcggcatggctgttgct 85
|||||||| || ||||| || ||| |||||||||||| ||||| || |||||| ||||
Sbjct: 1456 gatgctggttatcctggtgctctattacttggtgatgctgtttgtggtatggctactgct 1515
Query: 86 tatatcactaagagggatttcttattttggttccgatctcacacagcgaaggagatcaaa 145
|||||| || ||||| || || |||||| | |||||||| || ||||| ||||||
Sbjct: 1516 agaatcacttcaagagattttttgttctggttcaggtctcacactgccaaggaaatcaaa 1575
Query: 146 tggggtggtgcaaagcatcatccagaggacaaggacgatgggcagaggatgcatccacgc 205
||||| || ||||||||||||||||| || || || ||||| || || ||||||||| |
Sbjct: 1576 tggggaggagcaaagcatcatccagaagataaagatgatggtcaaagaatgcatccaaga 1635
Query: 206 tcttcattcaaggcattcttggaagtggtaaaaagccgaagtataccatgggagaacgca 265
|| ||||| || || ||| |||| |||||||| ||| ||||||| || |||||| ||
Sbjct: 1636 tcgtcatttaacgctttcctggaggtggtaaagagcagaagtatgccttgggaggtttca 1695
Query: 266 gaaatggatgctattcattctttgcagct 294
||||| |||||||||| ||||| |||||
Sbjct: 1696 gaaattaatgctattcactctttacagct 1724