Jatropha Genome Database
- JcCA0141181.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0141181.10 + phase: 0 /partial
(1374 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29794.m003382 retinal pigment epithelium, putative 837 0.0
>29794.m003382 retinal pigment epithelium, putative
Length = 1548
Score = 837 bits (422), Expect = 0.0
Identities = 944/1118 (84%)
Strand = Plus / Plus
Query: 1 aaagggacgtaccttagaaacggccctggcctctggcacataggagattacaaattccgg 60
|||||||||||||||||||| || |||||||| |||||||||| | ||||| ||||||
Sbjct: 268 aaagggacgtaccttagaaatggacctggcctatggcacatagagaactacaacttccgg 327
Query: 61 cacctttttgacggttacgccacattagtcaaactccacttcgaaaacggccgattaatg 120
||||| ||||| || || ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 328 cacctctttgatggctatgccacattagtcaaactccacttcgaaaacggcagattaatt 387
Query: 121 gccggtcaccggcaagttgaatcggaagcctacaaggcggcaaaaaagaacaaaaagtta 180
|| || ||||||||| | |||||||||| || || || || |||| ||||| || ||
Sbjct: 388 gcgggccaccggcaaatccaatcggaagcttataaagcagccaaaagaaacaagaaacta 447
Query: 181 tgctaccgcgaattctccgaagcaccaaagcccgataacttcttagcctatatcggagat 240
|| ||||| ||||| || |||| |||||||| || ||||||||| |||| ||||| ||
Sbjct: 448 tgttaccgtgaattttcagaagtgccaaagccagacaacttcttatcctacatcggcgac 507
Query: 241 ctcgctaacctcttttctggtgcttctttaaccgataatgctaataccggcgtagtgaag 300
|| ||||| ||||| |||||||| || || |||||||| || || ||||| ||| | |||
Sbjct: 508 cttgctaatctcttctctggtgcatccttgaccgataacgccaacaccggagtaatcaag 567
Query: 301 ctcggcgatggccgtgttgtttgtttaactgaaacacaaaaaggatcaattataatcgat 360
|||||||||||||||||||| || ||||| ||||| |||||||| || |||||| | |||
Sbjct: 568 ctcggcgatggccgtgttgtatgcttaacagaaacccaaaaagggtctattatagttgat 627
Query: 361 ccggataccttggatacgatagggaaatttgagtttaccgattcgctaggaggtttaata 420
|| || || ||||||| |||||||||||||||| || ||||| ||||| |||||||||
Sbjct: 628 ccagaaacactggatacaatagggaaatttgagtatagtgattcactaggtggtttaata 687
Query: 421 cattcggctcatccgatagtgaccgatacggaatttttgactttgttgcccgatttgata 480
|| ||||||||||| |||||||| || | || || || ||||||||||| ||||| |
Sbjct: 688 cactcggctcatccaatagtgacagacagcgagttcttaactttgttgccggatttattg 747
Query: 481 agaccgggttacttggtggtgaggatggcgcctggtagtaatgaaaggaaagtgatcgga 540
| || || |||||||| |||||||||| ||||||||| |||||||| || |||||||||
Sbjct: 748 aagccagggtacttggtagtgaggatggagcctggtagcaatgaaagaaaggtgatcgga 807
Query: 541 agagtggattgccggggcggaccggcgcctggatgggtacattcttttccggtgaccgaa 600
| ||||||||||| |||| || || || || ||||| || || ||||||||||| |||
Sbjct: 808 cgggtggattgccgcagcggtccagcaccagggtgggtgcactcgtttccggtgactgaa 867
Query: 601 cattatgttatagtgccagaaatgccattgagatattgtgcagcgaatttgttaaaagct 660
|| ||| |||||||||| ||||||||||||||||||||||| |||| |||||| ||||
Sbjct: 868 cactatattatagtgcctgaaatgccattgagatattgtgctcagaatctgttaagagct 927
Query: 661 gagcccacgccgctttataaatttgagtggcatcctgactctaaagcctttatgcacgtt 720
|||||||| || |||||||| ||||||||||||||||| ||||||| ||| |||| |||
Sbjct: 928 gagcccacaccactttataagtttgagtggcatcctgaatctaaagggtttgtgcatgtt 987
Query: 721 atgtgcaaagctagtggtaaaattgtggcaagcgtagaggtgccattgtacgtgacattc 780
||||| ||||||||||| || | |||||||||||||||||| || | | |||||||||
Sbjct: 988 atgtgtaaagctagtggcaagactgtggcaagcgtagaggtacctctatttgtgacattc 1047
Query: 781 catttcataaatgcatatgaggagaaagatgaagatggaagagttaaagcagtgatagct 840
|||||||||||||||||||| |||| |||||||||||| || || | ||||| ||||||
Sbjct: 1048 catttcataaatgcatatgaagagagagatgaagatgggagggtgactgcagttatagct 1107
Query: 841 gattgttgtgaacatagcgcagacaccaccattttagagaagcttaggctacaaaatctt 900
|||||||||||||||| ||||||||| | || |||||||||||||| ||||||||||||
Sbjct: 1108 gattgttgtgaacataacgcagacacaagtatattagagaagcttagactacaaaatctt 1167
Query: 901 cgctctttcgggggcgtagacgtgctgcctgatgctagggttgggagatttacaattcct 960
||||||||| ||| | ||| ||||| || ||||||||||||||||| || | ||||||
Sbjct: 1168 cgctctttcatgggtgcagatgtgctaccagatgctagggttgggaggttcataattcca 1227
Query: 961 ctggatgggagtccatatgggaagttggaggcagcattggacccagatgagcatggaaga 1020
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 1228 ttggatgggagtccatacgggaagttggaggcagcattggacccagatgaacatgggaga 1287
Query: 1021 ggcatggacatgtgcagctttaacccttcatttttgggcaaaaaatacagatatgcttat 1080
||||||||||||||||| | || ||| ||||||| |||| | |||| ||||||||||||
Sbjct: 1288 ggcatggacatgtgcagtatcaatcctgcatttttaggcatagaatatagatatgcttat 1347
Query: 1081 gcttgtggagcccaacgtccctgcaacttccccaacac 1118
||||||||||||||||| || ||||| ||||| |||||
Sbjct: 1348 gcttgtggagcccaacgcccgtgcaatttccctaacac 1385
Score = 135 bits (68), Expect = 8e-31
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 1255 gagaaaaatggagatgggtatgctctgttattagatggatccacatttgaagagattgca 1314
|||||||||||||| |||||||| || ||||||||||| || ||||| |||||||| |||
Sbjct: 1397 gagaaaaatggagaagggtatgcactattattagatgggtcgacattcgaagagatcgca 1456
Query: 1315 agagccaagtttccttatggtctaccttatgggttacatggatgttgggtgccaaagaaa 1374
||||| |||||||||||||||||||| |||||| | |||||||| ||||| |||||||||
Sbjct: 1457 agagcaaagtttccttatggtctaccatatgggcttcatggatgctgggttccaaagaaa 1516