Jatropha Genome Database

JcCA0140901.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0140901.10 + phase: 0 /pseudo/partial
         (299 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001188 casein kinase II beta chain, putative                   137   4e-32
29822.m003509 casein kinase II beta chain, putative                    74   5e-13

>29709.m001188 casein kinase II beta chain, putative
          Length = 1017

 Score =  137 bits (69), Expect = 4e-32
 Identities = 138/161 (85%)
 Strand = Plus / Plus

                                                                       
Query: 31  ggttcatcgagatcggagatcgagcgaaagcgcataaacgacgcgctagacaagcatcta 90
           ||||| |||||||||||||| || || ||||||||||| || ||||| ||||||||||||
Sbjct: 22  ggttcttcgagatcggagatggatcggaagcgcataaatgatgcgctggacaagcatcta 81

                                                                       
Query: 91  gagaagtcatccccttctacttcgcgtgccttgaacaataaggacaaagatagattgtcc 150
           ||||||| ||| ||||| ||||| ||| || |||| | |||||||||||| || ||||||
Sbjct: 82  gagaagttatctccttcaacttcccgtaccctgaatagtaaggacaaagaaaggttgtcc 141

                                                    
Query: 151 gtaccttccacgtctgccggtaaatctcagcttgatcatcg 191
           ||||| || || ||| |||||||||||||| | ||||||||
Sbjct: 142 gtaccatctacttctaccggtaaatctcagttcgatcatcg 182



 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                       
Query: 235 gtcaagttccatattatgattatgcacttgatctgatattggatgttgaatcctctcatg 294
           |||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 377 gtcaagttccgtattatgattatgcacttgatctgattttggacgttgagtcctcccatg 436

             
Query: 295 gt 296
           ||
Sbjct: 437 gt 438


>29822.m003509 casein kinase II beta chain, putative
          Length = 780

 Score = 73.8 bits (37), Expect = 5e-13
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gtcaagttccatattatgattatgcacttgatctgatattggatgttgaatcctctcatg 294
           |||||||||| || ||||| ||||| |||||| |||| ||||||||||||||||||||||
Sbjct: 407 gtcaagttccttactatgactatgcccttgatttgattttggatgttgaatcctctcatg 466

            
Query: 295 g 295
           |
Sbjct: 467 g 467