Jatropha Genome Database

JcCA0140011.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0140011.10 + phase: 1 /pseudo/partial
         (641 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010849 conserved hypothetical protein                          351   3e-96

>30190.m010849 conserved hypothetical protein
          Length = 618

 Score =  351 bits (177), Expect = 3e-96
 Identities = 500/604 (82%), Gaps = 4/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 38  agaccaccatctggccgtacaaatctcgcttcttgtatagttgctacaattttcttaatc 97
           ||||| |||||||||||||||||||| || || |||||||| || ||||| |||||||||
Sbjct: 16  agaccgccatctggccgtacaaatctagcatcatgtatagtagcaacaatcttcttaatc 75

                                                                       
Query: 98  tttgtcattatcattattcttatagtcttcttcaccgttttcaagcctaaagatcccaaa 157
           ||||| ||||||||||| ||||||||||| ||||||||||| || ||||||||||| |||
Sbjct: 76  tttgttattatcattatccttatagtctttttcaccgtttttaaacctaaagatcctaaa 135

                                                                       
Query: 158 atctccgtcaacgccgttcagctaccttctttctccgtttcaaacaacactgtcaacttt 217
           || || || ||||||||||| || || || || ||||| || ||||| || |||||||| 
Sbjct: 136 atatcagttaacgccgttcaactcccatcattttccgtctctaacaataccgtcaacttc 195

                                                                       
Query: 218 accttctccccagtacgtctccgtcaagaaccctaacaaagcttccttctctcactatga 277
           || ||||| | ||||||| || |||||||||||||||| |||| ||||||||||||||||
Sbjct: 196 actttctctc-agtacgtgtctgtcaagaaccctaacagagctaccttctctcactatga 254

                                                                       
Query: 278 cagtacccttcagctcctctactctggttcccaagttggtttcatgttcattcccgctgg 337
           |||||| || |||||||| || || ||||| ||||| || ||||||||||| ||||| ||
Sbjct: 255 cagtactctccagctcctttattcgggttctcaagtcgggttcatgttcatacccgccgg 314

                                                                       
Query: 338 caagatcgatgccggtcggacccaatacatggccgcaacttttgctgttcaatccttccc 397
            ||||||||  | ||||| ||||| |||||||| ||||||||||| || || || |||||
Sbjct: 315 taagatcgaatcgggtcgaacccagtacatggcagcaacttttgcagtccagtcattccc 374

                                                                       
Query: 398 gttgtcctcatcaccggatgcggcggtgaatgtgggtccgacattcgcgggcggtgtgtt 457
            || || ||||| || ||||| || ||||||||||||||| | ||  | ||  ||| |||
Sbjct: 375 tttatcgtcatcgcctgatgccgctgtgaatgtgggtccggcttttaccggaagtgggtt 434

                                                                       
Query: 458 acctggcggttatcccagtgttaatggtggatacagagtaggacccacgatggagattga 517
            || || |  || ||  ||  || |   |||| | |||||||||| || |||||||||||
Sbjct: 435 tccgggtg--ta-ccaggtagtagtaacggattccgagtaggacctactatggagattga 491

                                                                       
Query: 518 atccaggattcatatggcgggtcgggttcgggtgctgcacattttcacgcatcatgtgga 577
            ||||||||||| |||| |||||||||||||||  |||| ||||| || |||||||||||
Sbjct: 492 gtccaggattcagatggtgggtcgggttcgggtcttgcatatttttactcatcatgtgga 551

                                                                       
Query: 578 agctaaggctgggtgcagagtcgccattgctgtgagtgacggatctgtattagggtttca 637
           |||||| || |  |||||||| || ||||| |||||||| |||||||| |||||||||||
Sbjct: 552 agctaaagcagaatgcagagtggctattgcagtgagtgatggatctgtgttagggtttca 611

               
Query: 638 ttgc 641
           ||||
Sbjct: 612 ttgc 615