Jatropha Genome Database
- JcCA0140001.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0140001.20 - phase: 1 /partial
(350 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30005.m001300 chlorophyll A/B binding protein, putative 412 e-115
29693.m002051 chlorophyll A/B binding protein, putative 373 e-103
30076.m004578 chlorophyll A/B binding protein, putative 149 1e-35
30027.m000815 chlorophyll A/B binding protein, putative 111 3e-24
29597.m000282 chlorophyll A/B binding protein, putative 100 1e-20
29929.m004650 chlorophyll A/B binding protein, putative 52 2e-06
>30005.m001300 chlorophyll A/B binding protein, putative
Length = 798
Score = 412 bits (208), Expect = e-115
Identities = 313/348 (89%)
Strand = Plus / Plus
Query: 3 agcttgatccatgctcaaagtatcttggctatttgggcttgccaggtagtgttgatgggt 62
||||||||||| || ||||| |||||||| || ||||||| |||||| ||||||||||||
Sbjct: 448 agcttgatccacgcacaaagcatcttggccatctgggcttcccaggttgtgttgatgggt 507
Query: 63 gctgttgagggttacagagttgccggtggacctctcggtgaggtaacagacccaatctac 122
|| ||||||||||||||||||||||| || || || || ||||| || ||||||||||||
Sbjct: 508 gccgttgagggttacagagttgccggcgggccactaggagaggtgaccgacccaatctac 567
Query: 123 ccaggtggaagctttgacccattgggtttagctgatgacccggaagcatttgctgagctt 182
||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| |
Sbjct: 568 ccaggtggaagctttgacccattgggtttggctgatgacccagaggcattcgctgagttg 627
Query: 183 aaggtaaaggaaatcaagaatggtagattggctatgttctctatgtttggattctttgtt 242
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaggtgaaggagatcaagaacggtagattggctatgttctctatgtttggattctttgtt 687
Query: 243 caagccattgtgactggaaagggtccattggagaacttggctgaccacttggctgaccca 302
|| |||||||| || |||||||| |||||||||||||||||||||||| | ||||| ||
Sbjct: 688 caggccattgttacaggaaagggaccattggagaacttggctgaccaccttgctgatccc 747
Query: 303 gtcaacaacaacgcctgggcttatgccacaaacttcgtccccggaaag 350
||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 748 gtcaacaacaatgcctgggcatatgccacaaactttgtccccggaaag 795
>29693.m002051 chlorophyll A/B binding protein, putative
Length = 798
Score = 373 bits (188), Expect = e-103
Identities = 308/348 (88%)
Strand = Plus / Plus
Query: 3 agcttgatccatgctcaaagtatcttggctatttgggcttgccaggtagtgttgatgggt 62
||||||||||| || ||||| |||||||| || ||||||||||| || ||||||||||||
Sbjct: 448 agcttgatccacgcacaaagcatcttggccatctgggcttgccaagtcgtgttgatgggt 507
Query: 63 gctgttgagggttacagagttgccggtggacctctcggtgaggtaacagacccaatctac 122
|||||||||||||||||||||||||| || || || || ||||| || ||||||||||||
Sbjct: 508 gctgttgagggttacagagttgccggcgggccactaggagaggtgaccgacccaatctac 567
Query: 123 ccaggtggaagctttgacccattgggtttagctgatgacccggaagcatttgctgagctt 182
|||||||| |||||||||||||||||||| ||||||||||| || ||||| || ||| |
Sbjct: 568 ccaggtgggagctttgacccattgggtttggctgatgacccagaggcattcgccgagttg 627
Query: 183 aaggtaaaggaaatcaagaatggtagattggctatgttctctatgtttggattctttgtt 242
|| || ||||| |||||||| || ||| ||||||||||||||||||||||||| ||||||
Sbjct: 628 aaagtgaaggagatcaagaacggcagactggctatgttctctatgtttggattttttgtt 687
Query: 243 caagccattgtgactggaaagggtccattggagaacttggctgaccacttggctgaccca 302
||||||||||| || |||||||| ||||||||||||||||||||||| | || |||||
Sbjct: 688 caagccattgttacaggaaagggaccattggagaacttggctgaccatcttgccgacccc 747
Query: 303 gtcaacaacaacgcctgggcttatgccacaaacttcgtccccggaaag 350
||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 748 gtcaacaacaatgcctgggcatatgccacaaactttgtccccggaaag 795
>30076.m004578 chlorophyll A/B binding protein, putative
Length = 804
Score = 149 bits (75), Expect = 1e-35
Identities = 249/307 (81%)
Strand = Plus / Plus
Query: 44 ccaggtagtgttgatgggtgctgttgagggttacagagttgccggtggacctctcggtga 103
|||||| ||| | |||||||||||||||||||| | | || || ||||| || |||||
Sbjct: 495 ccaggttgtgctaatgggtgctgttgagggttatcgtatcgcaggaggaccccttggtga 554
Query: 104 ggtaacagacccaatctacccaggtggaagctttgacccattgggtttagctgatgaccc 163
||| || ||||| | |||||||| || |||||||| || ||||| | |||||||| ||
Sbjct: 555 ggttactgaccccttgtacccaggaggcagctttgatcccttgggacttgctgatgatcc 614
Query: 164 ggaagcatttgctgagcttaaggtaaaggaaatcaagaatggtagattggctatgttctc 223
|| |||||||| ||||||||||| || ||||| ||||| || | | || ||||||||
Sbjct: 615 tgaggcatttgcagagcttaaggtgaaagaaattaagaacgggcggcttgccatgttctc 674
Query: 224 tatgtttggattctttgttcaagccattgtgactggaaagggtccattggagaacttggc 283
||||||||| |||||||||||||| ||||| ||||| || || || | |||||| | ||
Sbjct: 675 tatgtttggtttctttgttcaagctattgtcactggcaaaggacctctagagaaccttgc 734
Query: 284 tgaccacttggctgacccagtcaacaacaacgcctgggcttatgccacaaacttcgtccc 343
|| || | |||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 735 cgatcatcttgctgaccctgtcaacaacaacgcttgggcttatgccacaaactttgtccc 794
Query: 344 cggaaag 350
||||||
Sbjct: 795 tggaaag 801
>30027.m000815 chlorophyll A/B binding protein, putative
Length = 807
Score = 111 bits (56), Expect = 3e-24
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 171 tttgctgagcttaaggtaaaggaaatcaagaatggtagattggctatgttctctatgttt 230
||||||||||| ||||| ||||||||||||||||| || | || |||||||| ||||||
Sbjct: 625 tttgctgagctcaaggtgaaggaaatcaagaatggcaggctagccatgttctccatgttt 684
Query: 231 ggattctttgttcaagccattgtgactggaaagggtccattgga 274
|| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 685 ggcttctttgttcaagctattgtaactggaaagggtcccttgga 728
>29597.m000282 chlorophyll A/B binding protein, putative
Length = 798
Score = 99.6 bits (50), Expect = 1e-20
Identities = 161/198 (81%)
Strand = Plus / Plus
Query: 153 gctgatgacccggaagcatttgctgagcttaaggtaaaggaaatcaagaatggtagattg 212
|||||||| || ||||||||||||||| | ||||| ||||| ||||||||||| | |||
Sbjct: 598 gctgatgatcctgaagcatttgctgagttgaaggtgaaggagatcaagaatggacgcttg 657
Query: 213 gctatgttctctatgtttggattctttgttcaagccattgtgactggaaagggtccattg 272
|| ||||| || |||||||||||||| ||||| || ||||| ||||||||||| || |
Sbjct: 658 gcgatgttttccatgtttggattcttcgttcaggctattgtcactggaaagggacctatt 717
Query: 273 gagaacttggctgaccacttggctgacccagtcaacaacaacgcctgggcttatgccaca 332
|||||| | || || | ||||||||||| |||||| || |||||||| |||||
Sbjct: 718 gagaacctcttcgatcatgttgctgacccagtggccaacaatgcatgggcttacgccact 777
Query: 333 aacttcgtccccggaaag 350
|||||||| |||||||||
Sbjct: 778 aacttcgttcccggaaag 795
>29929.m004650 chlorophyll A/B binding protein, putative
Length = 813
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 195 atcaagaatggtagattggctatgtt 220
||||||||||||||||||||||||||
Sbjct: 667 atcaagaatggtagattggctatgtt 692