Jatropha Genome Database

JcCA0138711.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0138711.10 - phase: 0 
         (357 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29785.m000932 myb81, putative                                         323   4e-88
29686.m000890 r2r3-myb transcription factor, putative                 119   1e-26

>29785.m000932 myb81, putative
          Length = 1437

 Score =  323 bits (163), Expect = 4e-88
 Identities = 247/275 (89%)
 Strand = Plus / Plus

                                                                       
Query: 68  ttgaagaagctagtaatggtcctttgaagaagggcccatggactgccgcagaagatgcaa 127
           |||||||||||| |||  |||| |||||||| ||||| |||||  | |||||||||||||
Sbjct: 68  ttgaagaagctattaacagtccgttgaagaaaggcccgtggacctctgcagaagatgcaa 127

                                                                       
Query: 128 ttttggtggattatgttactaagcatggagagggaaactggaatgctgtccagaagcact 187
           |||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 128 ttttagtggattatgtaactaagcatggagaaggaaattggaatgctgtccagaagcact 187

                                                                       
Query: 188 cagggctctcccgatgtggaaaaagctgtcgcttgcgatgggcaaatcacctaagaccag 247
           ||||||| |||||||| || |||||||||||  |||||||||||||||||||||||||||
Sbjct: 188 cagggctatcccgatgcgggaaaagctgtcgactgcgatgggcaaatcacctaagaccag 247

                                                                       
Query: 248 atttaaagaagggtgcattcactccagaggaagagcgccgcataattgagctccatgcta 307
           |||||||||| |||||||||||| || | ||||| || || || ||||| ||||||||||
Sbjct: 248 atttaaagaaaggtgcattcactgcacaagaagaacggcgtattattgaactccatgcta 307

                                              
Query: 308 agatgggaaacaaatgggcaagaatggctgcagag 342
           |||||||||||||||||||| ||||||||||||||
Sbjct: 308 agatgggaaacaaatgggcacgaatggctgcagag 342


>29686.m000890 r2r3-myb transcription factor, putative
          Length = 1671

 Score =  119 bits (60), Expect = 1e-26
 Identities = 201/248 (81%)
 Strand = Plus / Plus

                                                                       
Query: 92  tgaagaagggcccatggactgccgcagaagatgcaattttggtggattatgttactaagc 151
           ||||||| || ||||||||  | || ||||||||||||||| | || ||||| |  || |
Sbjct: 113 tgaagaaagggccatggacatctgctgaagatgcaattttgatagaatatgtgaagaaac 172

                                                                       
Query: 152 atggagagggaaactggaatgctgtccagaagcactcagggctctcccgatgtggaaaaa 211
           |||| ||||| ||||||||||| || |||||||||||||| || || || ||||| ||||
Sbjct: 173 atggggaggggaactggaatgccgttcagaagcactcaggactttctcgctgtggcaaaa 232

                                                                       
Query: 212 gctgtcgcttgcgatgggcaaatcacctaagaccagatttaaagaagggtgcattcactc 271
           ||||  | ||||||||||| |||||||| || ||  |||| || || || ||||| ||||
Sbjct: 233 gctgcagattgcgatgggccaatcacctgaggcctaatttgaaaaaaggggcatttactc 292

                                                                       
Query: 272 cagaggaagagcgccgcataattgagctccatgctaagatgggaaacaaatgggcaagaa 331
            ||| ||||| |     || |||||||||||||| ||||||||||||||||||||| | |
Sbjct: 293 aagaagaagaacagttaatcattgagctccatgccaagatgggaaacaaatgggcacgca 352

                   
Query: 332 tggctgca 339
           ||||||||
Sbjct: 353 tggctgca 360