Jatropha Genome Database

JcCA0138571.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0138571.10 + phase: 0 /pseudo/partial
         (435 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30078.m002305 conserved hypothetical protein                          137   6e-32

>30078.m002305 conserved hypothetical protein
          Length = 321

 Score =  137 bits (69), Expect = 6e-32
 Identities = 129/149 (86%)
 Strand = Plus / Plus

                                                                       
Query: 253 gagttgcttctagggttagtgttctgtttttgggcagccttaactgtaccgggaaagttc 312
           |||||||||||||| |||||||| ||| | ||||| || |||||||  || |||||||||
Sbjct: 136 gagttgcttctaggattagtgttatgtatgtgggccgctttaactgcgccaggaaagttc 195

                                                                       
Query: 313 cgatccatacacccttattctgatgaaaataggatagtttctttacccgctaatatggac 372
           | ||||||||||||| ||||||| || ||||| ||||| |||||||| |  |||||||||
Sbjct: 196 ctatccatacaccctcattctgaagagaatagaatagtctctttaccagacaatatggac 255

                                        
Query: 373 ttcatggtctttaaccatcgtggcaaagt 401
           |||||| |||| |||||||||||||||||
Sbjct: 256 ttcatgatcttcaaccatcgtggcaaagt 284



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                       
Query: 76  tgaagattatggaggaggaattttcaggacctccaatgaatgtg 119
           ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 86  tgaagatcatggaggaggaatttgcaggacctccaatgaatgtg 129