Jatropha Genome Database

JcCA0134961.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0134961.10 - phase: 0 /partial
         (555 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29633.m000903 ATP synthase mitochondrial F1 complex assembly fac...   597   e-170

>29633.m000903 ATP synthase mitochondrial F1 complex assembly factor
           2, mitochondrial precursor, putative
          Length = 1005

 Score =  597 bits (301), Expect = e-170
 Identities = 474/534 (88%)
 Strand = Plus / Plus

                                                                       
Query: 6   agatggaatcaggccttttatgatgcctcttatgaaacttgcgtgtaccgccctggagag 65
           ||||||||| ||||||||||  |||||||||||||||||||| ||||| ||  |||||||
Sbjct: 453 agatggaattaggccttttacaatgcctcttatgaaacttgcttgtactgcattggagag 512

                                                                       
Query: 66  agttccgctcacaagaccaaagatcattgaacacttgatgaagaaatttaatcaagattt 125
           |||||| || ||  | | |||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 513 agttccacttacgcggctaaagattattgaaaacttgatgaagaaattcaatcaagattt 572

                                                                       
Query: 126 agttttctgtcgtgctccagaagataatgatctcacaaggggcgtctatgaacggcaagt 185
           ||||||||||||||||||||| |||||||||||||| || || |||||||||||||| ||
Sbjct: 573 agttttctgtcgtgctccagaggataatgatctcaccagtggtgtctatgaacggcaggt 632

                                                                       
Query: 186 ggaaaaaattgatccgttacttgattgggtgaaatcagaatttggctttaagcctgttgt 245
           ||| ||||||||||| || |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 633 ggagaaaattgatcccttgcttgattgggtgaaatcagagtttggctttaagccagttgt 692

                                                                       
Query: 246 gcattcaagnnnnnnnggtggcaagcaagaggagggtctggtgaaggcgatagaagatct 305
           | | |||||       ||||||||||||||||| ||| |||||||||| ||||| || ||
Sbjct: 693 gtactcaagtttttttggtggcaagcaagaggaaggtttggtgaaggcaatagaggacct 752

                                                                       
Query: 306 tctacagaaaactgacaactttgaattggcatcaattgatgcaattgcagcagcagccca 365
           |||| ||||||||||||||| |||||||||| |||||||||||||||||||| | |||||
Sbjct: 753 tctaaagaaaactgacaactgtgaattggcagcaattgatgcaattgcagcatctgccca 812

                                                                       
Query: 366 ttctttagtaattgctgttggaatctttcgtggaaaattggatattgaagaagccattca 425
           |||||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||||
Sbjct: 813 ttctttagtaattgctattggaatcgttcgtggaaaattagatattgaggaagccattca 872

                                                                       
Query: 426 gttgatcaggcttgaagaagatttgcaggttgacaagtggggtttggttgaaggtggcca 485
           |||||| || |||||||||||||||||||||||||  ||||| || ||||||||||| ||
Sbjct: 873 gttgattagacttgaagaagatttgcaggttgacagatggggcttagttgaaggtggtca 932

                                                                 
Query: 486 cgatgtagatattgctgatctgagggtacaagtatcatcagctgctgtgttcct 539
            ||| |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 933 tgatatagatattgctgatctgagggtacaaatatcatctgctgctgtgttcct 986