Jatropha Genome Database

JcCA0132021.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0132021.10 + phase: 0 /partial
         (414 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30026.m001501 mads box protein, putative                              349   8e-96

>30026.m001501 mads box protein, putative
          Length = 534

 Score =  349 bits (176), Expect = 8e-96
 Identities = 355/414 (85%), Gaps = 3/414 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctatcagcaacaagctgccaagctgcgtgatcaaattagcggcttgcagaaatcaatc 60
           |||||||| ||| ||||||||||||| ||||  |||||| ||   |||||||| |||| |
Sbjct: 121 ttctatcaacaagaagctgccaagctacgtgtgcaaattggcaatttgcagaattcaaac 180

                                                                       
Query: 61  aggaacatgctgggtgaatctctcggaggcattaatcccaaggaccttaggggcttggag 120
           ||| | ||||||||||| ||||| |||| | | |||   || ||||||| ||||||||||
Sbjct: 181 aggcatatgctgggtgagtctctgggagccttgaatttgaaagaccttaagggcttggag 240

                                                                       
Query: 121 agcaggctagagaaaggaattagtagaattcggtccaaaaagaatgagctgttgtttgca 180
            |  | ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| 
Sbjct: 241 ggacgactagagaaaggaattagcagaattcgatccaaaaagaacgagctattgtttgct 300

                                                                       
Query: 181 gagatcgagtacatgcaaaaaagggaaattgatttgcacaataataaccagcttctccga 240
           || || || || ||||| ||||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 301 gaaattgaatatatgcagaaaagggaaattgatttgcacaacaataatcagcttcttcga 360

                                                                       
Query: 241 gcgaagattgctgagaatgaaaggaagcaacagaacatgaatctgatgccaggaggaggt 300
           || ||||||||||||||||| ||||||||   |||||||||| ||||||||||||| || 
Sbjct: 361 gccaagattgctgagaatgagaggaagca---gaacatgaatttgatgccaggaggcggg 417

                                                                       
Query: 301 aactatgagataattcagtctcagccatttgacaatcgaaactattttcaagtcaatgca 360
           |||||||||||||| || |||||||||||||| ||| | |||||||||||||| ||||||
Sbjct: 418 aactatgagataatgcaatctcagccatttgataataggaactattttcaagtgaatgca 477

                                                                 
Query: 361 ttacaacccaccaatcattatccacaacaagatcaaatggccctccagttagtg 414
           |||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 478 ttacaatccaccaatcattacccacaccaagatcagatggcccttcagttagtg 531