Jatropha Genome Database

JcCA0131921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0131921.10 + phase: 0 /pseudo
         (1017 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002380 conserved hypothetical protein                          434   e-121

>29729.m002380 conserved hypothetical protein
          Length = 1782

 Score =  434 bits (219), Expect = e-121
 Identities = 351/395 (88%)
 Strand = Plus / Plus

                                                                       
Query: 530 cttcaaaaaatcatgatcagatgaagtcaagaggggatgcttcggagtgtgggagtacta 589
           |||| |||||||| |||||  |||||| |||| ||||   ||| |||||||| ||||| |
Sbjct: 512 cttccaaaaatcaagatcaattgaagttaagaagggacctttctgagtgtggtagtacaa 571

                                                                       
Query: 590 ctggtccagcggaggggaaagatccattgaaagtctggaaggagatgaaacaaaatggtt 649
           | ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct: 572 caggtccagtggaggggaaagatccattgaaagtttggacggagatgaaacaaaatgggt 631

                                                                       
Query: 650 ttctctcatcttctcaggggggcatttcgtttcaaagtggtttaatctcatcttcacatg 709
           |||||||||||||||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 632 ttctctcatcttctcatgggggcatttcatttcaaagtggtctagtctcatcttcacatg 691

                                                                       
Query: 710 gagggataccaatgccaaagcaacgtgggagaaaaagcaagaatgatgttcttaagaaaa 769
           |||| |||||||||||||| ||||||||| | |||| ||||||||||||||| |||||||
Sbjct: 692 gaggtataccaatgccaaaacaacgtgggcggaaaaacaagaatgatgttctcaagaaaa 751

                                                                       
Query: 770 agatggagcttgctaagaaagaacaagttgataggttcacaaagatagctgctccaagtg 829
            |||||||||||| |||||||||||||| ||||| |||||||| || ||||| ||||| |
Sbjct: 752 ggatggagcttgcaaagaaagaacaagtcgatagattcacaaaaattgctgcaccaagcg 811

                                                                       
Query: 830 gactcttaaatggattgaaccctggtattataaatcacgtgagaaacagaaaacaggtcc 889
           |||| |||||||||||||| ||||| ||||| ||||||||||| |||| |||||| || |
Sbjct: 812 gactgttaaatggattgaatcctgggattatcaatcacgtgaggaacaaaaaacaagttc 871

                                              
Query: 890 attccataatagaggccttagtgaggtctgaaaaa 924
           | |||||||||||||||||||||||||||||||||
Sbjct: 872 actccataatagaggccttagtgaggtctgaaaaa 906



 Score =  151 bits (76), Expect = 1e-35
 Identities = 127/144 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagagtgaaggtgatctagggttgccaggatcggattctaaggagattggagagaag 60
           ||||||| | |||| ||| |||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 1   atgaagaatcaaggcgatttagggttgcccggatctgattctaaggtgattggagagaag 60

                                                                       
Query: 61  cgaagtagtggtgaattgggagagaaacaagaaagtgctcctaagcggattaaaatgcga 120
           || |  ||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct: 61  cggatcagttgtgaattgggagagaaacaagaaagtgctcttaagcggatcaaaatgaga 120

                                   
Query: 121 gatcttcattccgtgttgaggtct 144
           |||||| |||  ||||||||||||
Sbjct: 121 gatcttaattttgtgttgaggtct 144