Jatropha Genome Database

JcCA0128181.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0128181.10 - phase: 0 /partial
         (808 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29992.m001415 conserved hypothetical protein                          167   1e-40

>29992.m001415 conserved hypothetical protein
          Length = 1095

 Score =  167 bits (84), Expect = 1e-40
 Identities = 324/404 (80%)
 Strand = Plus / Plus

                                                                       
Query: 259 ctccgcgaacctgactccggcgcaggagacaacaacctctgcagatggttctacgacaca 318
           |||||| | |||||||| || || || ||||| ||||| ||||| |||||||||||||||
Sbjct: 244 ctccgccaccctgactctggtgccggcgacaataacctttgcaggtggttctacgacaca 303

                                                                       
Query: 319 ttccaatccacctctcctcaactccaactcgtcgttctccgatttgtcccaatcatcgct 378
           ||||||||||||||  | ||||||||||| || || || || ||  ||||||| || || 
Sbjct: 304 ttccaatccacctcctcccaactccaacttgtggtccttcgtttcctcccaattatagcc 363

                                                                       
Query: 379 ggtctttacctctcgcgtgtcccactgagaaaacctttagccggattcgaagcagttttg 438
           ||  | || ||||| ||  | ||  || | || || ||||| || || || ||| || | 
Sbjct: 364 ggcttatatctctctcgcattcctttgcgtaagcccttagcagggtttgaggcaattcta 423

                                                                       
Query: 439 ctcgctctctacgcgcacgaaacgacatcgcgcaatggccaagctatagcagtaaacata 498
            | |||||||| || || ||||| || ||  | ||||||||||||||| | || || |||
Sbjct: 424 ttagctctctatgcccatgaaactacctccaggaatggccaagctataacggtgaatata 483

                                                                       
Query: 499 cctgatctatcaaattctagtgtatatcatgaaaccaaagagacatcaaagaacaacgcg 558
           |||||| | ||||| || ||||| ||||||||||| || |||| ||||||||| || || 
Sbjct: 484 cctgatttgtcaaactcaagtgtgtatcatgaaacgaaggagatatcaaagaataatgct 543

                                                                       
Query: 559 actgatttaaacttagcagtgatatctccaagcttagagcctcatggaaccgttagatca 618
           || ||||||||| ||||||| ||||||||||| ||||||||||| || || || ||||||
Sbjct: 544 acggatttaaacctagcagttatatctccaagtttagagcctcacgggactgtaagatca 603

                                                       
Query: 619 acaagaagagcaagaattgttggggttgcattagaattatattt 662
           ||||||||||||||||||||| | ||||||||||| || |||||
Sbjct: 604 acaagaagagcaagaattgttagtgttgcattagagttgtattt 647