Jatropha Genome Database
- JcCA0128121.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0128121.10 - phase: 2 /partial
(1738 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
48562.m000006 pentatricopeptide repeat-containing protein, putative 1110 0.0
28196.m000208 pentatricopeptide repeat-containing protein, putative 272 7e-72
28196.m000212 pentatricopeptide repeat-containing protein, putative 180 2e-44
>48562.m000006 pentatricopeptide repeat-containing protein, putative
Length = 1557
Score = 1110 bits (560), Expect = 0.0
Identities = 1009/1158 (87%), Gaps = 3/1158 (0%)
Strand = Plus / Plus
Query: 1 gagactgaggagcattacaagttggaatattatgatttcattgcatatgaattctggaag 60
|||||| ||||||||| |||||||||||||||||||||| ||||||||| || ||| |
Sbjct: 399 gagactaaggagcatttcaagttggaatattatgatttccttgcatatgcatggtggtcg 458
Query: 61 aattgaccttgcccttgctcaatttcaacaaatgagtgagagggatatagttacttggaa 120
| ||||||||| |||||||||||| | ||||||||||| | ||| |||| ||||||||
Sbjct: 459 agctgaccttgctcttgctcaatttgagcaaatgagtgaacgcgatgtagtgacttggaa 518
Query: 121 ttcaatgattgcaggatataatcagcatggttttgataaggaagcactagaactcttctc 180
|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttcaatgattacaggatacagtcagcatggttttgataaggaagcactagaactcttctc 578
Query: 181 tagcatgttgcaggattcttctttgaaacctgataagttcaccttagcaagtactttatc 240
||| |||||| | ||||||| | |||||||||| ||| ||||| || |||| ||||||
Sbjct: 579 tagaatgttggaagattctt---taaaacctgataggtttaccttggcgagtattttatc 635
Query: 241 agcttgtaccaatcttgagaatatgaatcttgggaaacaaattcatagttatattatcag 300
||||||| ||||| ||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct: 636 agcttgtgccaatattgagaacttgaatcttgggaaacaaattcattcttatatcatcag 695
Query: 301 gacagagtttgatatttctggggctgttcaaaatgctttgatatcaatgtatgcaaagac 360
||||||||||||||| ||||| | || |||||||||||||| |||||||||||||||||
Sbjct: 696 gacagagtttgatatatctggtgtggtgcaaaatgctttgatctcaatgtatgcaaagac 755
Query: 361 tggcggggttgaagtcgctcggagggttgtagagcaaagtgagatttcagatcttgatgc 420
||| ||||||||| | || | || ||||||||||||||| |||||||||||| |||
Sbjct: 756 tggaggggttgaaattgcacaaagcattgtagagcaaagtggaatttcagatcttaatgt 815
Query: 421 tatagcctttactgctctattggatggatatgccaagcttggggatataaccccagccag 480
|||||| ||||| |||||||| ||||| |||| |||||||| ||||||||||||||||
Sbjct: 816 tatagcatttacagctctattagatggttatgttaagcttggaaatataaccccagccag 875
Query: 481 gcagatatttgactcgttgagaaaccgtgatgtggttgcatggacagccatgattgtagg 540
|| || |||||||| |||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 876 acatatttttgactcattgaaagacagtgatgtggttgcatggacagccatgattgtagg 935
Query: 541 ttatgtgcagaatggcctaaatgatgatgctttagagcttttcagagcaatgactaaaga 600
|||||| ||||||||| | ||||||||||| | |||||||| ||| |||| |||||||
Sbjct: 936 ttatgtacagaatggcttgaatgatgatgccatggagctttttagaataatggctaaaga 995
Query: 601 aggaccccgaccaaacagttttacactagccgctatgttgagtgtcagttcaagaggggc 660
||||||||||||||||||||||||||| || || ||||||||||||||||||| | |||
Sbjct: 996 aggaccccgaccaaacagttttacactggcagccatgttgagtgtcagttcaaatgtggc 1055
Query: 661 ttctttgaatcatggcaaacaaattcatgcaagcgccataagatcaagggaagatctatc 720
||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||
Sbjct: 1056 ttctttgaatcatggcaaacaaattcatgcaagtgccataagatcgggggaaaatttatc 1115
Query: 721 gatttctgtgggcaatgcgctgattacaatgtatgcaaaagctggaagcattgacaatgc 780
|||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||
Sbjct: 1116 agtttcggtgggcaatgcactgattacgatgtacgcaaaagctggaagcatcactgatgc 1175
Query: 781 gcagaaggtattcaatctcatatgttggaacaacgatactgtctcttggagttctatgat 840
||| ||||||| ||||||||| ||||||| |||||||||||||||| |||||||||
Sbjct: 1176 acagcaggtatttaatctcatacaacggaacaaggatactgtctcttggacttctatgat 1235
Query: 841 tattgctttggctcagcatggccttggagaagaagcaatagagctgtttgagaagatgtt 900
||| ||||| | ||| ||||| |||||| ||||| | |||||||| ||||||||||||||
Sbjct: 1236 tatagctttaggtcaacatggtcttggacaagaatctatagagctatttgagaagatgtt 1295
Query: 901 ggcacttggtattgagcctgaccatataacttatgttggtgtgctgtcagcttgtacgca 960
||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 1296 ggcacttggtattaagcctgaccatataacttatgttggtgtgctctctgcttgtacaca 1355
Query: 961 tgtaggattggtggagcagggtcggagctattttaatttgatggcaagtgtgcacaaaat 1020
|||||||||||| ||||||||| || | || |||||||||||| ||||| | ||||||||
Sbjct: 1356 tgtaggattggtagagcagggtagggggtactttaatttgatgacaagtatacacaaaat 1415
Query: 1021 tgagccaactttaagccactatgcatgcatgattgacctatatggccgagctggattgct 1080
|||||||||||||||||||||||| |||||||||||||| | ||| || ||||| |||||
Sbjct: 1416 tgagccaactttaagccactatgcgtgcatgattgacctgtttgggcgtgctggcttgct 1475
Query: 1081 gcaagaagcatttaaatttatagaaaacatgcctattgaaccagatgttatagcttgggg 1140
|||||||||||||| || || || || ||||| ||||||||||||||||||||||||||
Sbjct: 1476 gcaagaagcatttagtttcattgagaatatgcccattgaaccagatgttatagcttgggg 1535
Query: 1141 ttcactgctatcttcttg 1158
||||||| ||||||||||
Sbjct: 1536 ttcactgttatcttcttg 1553
>28196.m000208 pentatricopeptide repeat-containing protein, putative
Length = 1215
Score = 272 bits (137), Expect = 7e-72
Identities = 333/401 (83%), Gaps = 18/401 (4%)
Strand = Plus / Plus
Query: 134 ggatataatcagcatggttttgataaggaagcactagaactcttctctagcatgttgcag 193
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 340 ggatacaatcagcatggttttgataaggaagcactagaactcttctctagaatgttggaa 399
Query: 194 gattcttctttgaaacctgataagttcaccttagcaagtactttatcagcttgtaccaat 253
||||||| | |||||||||| ||| ||| | || ||| ||||||||||||| |||||
Sbjct: 400 gattctt---taaaacctgataggtttaccctggcgagtgttttatcagcttgtgccaat 456
Query: 254 cttgagaatatgaatcttgggaaacaaattcatagttatattatcaggacagagtttgat 313
|||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct: 457 cttg---------------ggaaacaaattcattcttatatcatcaggacagagtttgat 501
Query: 314 atttctggggctgttcaaaatgctttgatatcaatgtatgcaaagactggcggggttgaa 373
|| ||||| | || || ||||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 502 atatctggcgtggtgcagaatgctttgatctcaatgtgtgcaaagactggaggggttgaa 561
Query: 374 gtcgctcggagggttgtagagcaaagtgagatttcagatcttgatgctatagcctttact 433
| || | || |||||||||||||||| |||||||||||| ||| |||||| |||||
Sbjct: 562 attgcacaaagcgttgtagagcaaagtggaatttcagatcttaatgttatagcatttaca 621
Query: 434 gctctattggatggatatgccaagcttggggatataaccccagccaggcagatatttgac 493
|| ||||||||||| |||| ||||||||| |||||||||||||||| || || ||||||
Sbjct: 622 gccctattggatggttatgttaagcttgggaatataaccccagccagacatatttttgac 681
Query: 494 tcgttgagaaaccgtgatgtggttgcatggacagccatgat 534
|| |||| | |||||||| |||||| |||||||||||||||
Sbjct: 682 tcattgaaagaccgtgatatggttgtatggacagccatgat 722
Score = 222 bits (112), Expect = 5e-57
Identities = 154/168 (91%)
Strand = Plus / Plus
Query: 815 gatactgtctcttggagttctatgattattgctttggctcagcatggccttggagaagaa 874
|||||||||||||||| |||||||||||| ||||| ||||| ||||| |||||| |||||
Sbjct: 856 gatactgtctcttggacttctatgattatagctttagctcaacatggtcttggacaagaa 915
Query: 875 gcaatagagctgtttgagaagatgttggcacttggtattgagcctgaccatataacttat 934
| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 916 tctatagagctatttgagaagatgttggcacttggtattaagcctgaccatataacttat 975
Query: 935 gttggtgtgctgtcagcttgtacgcatgtaggattggtggagcagggt 982
||||||||||| || |||||||| |||||||||||||| |||||||||
Sbjct: 976 gttggtgtgctctctgcttgtacacatgtaggattggtagagcagggt 1023
Score = 155 bits (78), Expect = 1e-36
Identities = 117/130 (90%)
Strand = Plus / Plus
Query: 618 gttttacactagccgctatgttgagtgtcagttcaagaggggcttctttgaatcatggca 677
||||||||||||| || ||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 723 gttttacactagcagccatgttgagtgtcagttcaaatgtggcttctttgaatcatggca 782
Query: 678 aacaaattcatgcaagcgccataagatcaagggaagatctatcgatttctgtgggcaatg 737
|||||||||||||||| |||||||||||| ||||| || |||| |||| ||||||||||
Sbjct: 783 aacaaattcatgcaagtgccataagatcaggggaaaatttatcagtttcggtgggcaatg 842
Query: 738 cgctgattac 747
| ||||||||
Sbjct: 843 cactgattac 852
>28196.m000212 pentatricopeptide repeat-containing protein, putative
Length = 342
Score = 180 bits (91), Expect = 2e-44
Identities = 133/147 (90%)
Strand = Plus / Plus
Query: 836 atgattattgctttggctcagcatggccttggagaagaagcaatagagctgtttgagaag 895
|||||||| ||||| | ||| ||||| |||||| ||||| | |||||||| |||||||||
Sbjct: 1 atgattatagctttaggtcaacatggtcttggacaagaatctatagagctatttgagaag 60
Query: 896 atgttggcacttggtattgagcctgaccatataacttatgttggtgtgctgtcagcttgt 955
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct: 61 atgttggcacttggtattaagcctgaccatataacttatgttggtgtgctctctgcttgt 120
Query: 956 acgcatgtaggattggtggagcagggt 982
|| |||||||||||||| |||||||||
Sbjct: 121 acacatgtaggattggtagagcagggt 147