Jatropha Genome Database
- JcCA0125231.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0125231.10 + phase: 0 /pseudo/partial
(1028 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29851.m002453 multidrug resistance pump, putative 428 e-119
27504.m000640 multidrug resistance pump, putative 72 7e-12
30170.m013980 multidrug resistance pump, putative 60 3e-08
>29851.m002453 multidrug resistance pump, putative
Length = 1491
Score = 428 bits (216), Expect = e-119
Identities = 534/636 (83%), Gaps = 3/636 (0%)
Strand = Plus / Plus
Query: 265 gcctggactggtttttccctttcagctttttacgtcattagctggttttgtaaagctttc 324
|||||||||||||||||| ||||||||| | ||||||||||||||||||||| || ||
Sbjct: 733 gcctggactggtttttcctgttcagctttcaa-gtcattagctggttttgtaaaactctc 791
Query: 325 acttgcatctgctgtaatgttatgcttggagctatggtattttacgattgtgattcttat 384
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 792 tcttgcatcagctgtaatgttatgcttggagctatggtactttacagctgtgattcttat 851
Query: 385 ggtgggatggttaaagaatccagagattgcagtagatgctatttccatttg-atgaacct 443
|||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct: 852 ggtgggatggttgaagaatccagaaattgcagttgatgccatttccatttgcatgaacct 911
Query: 444 ggaactatggactcttatgattgctcttggtttcaatgcagcaataagtgttcgagtatc 503
| | | |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 912 gcagttgtggactctgatgattgctctcggtttcaatgcagcaataagtgtgcgagtttc 971
Query: 504 gaatgagcttggagctggaaatcctaaagcagcaaaattttcagtgttggtgactgtttt 563
||||| ||||| || ||||||||||||||||||||||| || || |||||||||||||
Sbjct: 972 aaatgaacttggggccggaaatcctaaagcagcaaaattctctgtaatggtgactgtttt 1031
Query: 564 aacatccttaattattggagttgtattcacaattataattattgtgtccaagaatgactt 623
||||||| ||| |||||||| |||||||| | | ||| | | |||||||||| ||
Sbjct: 1032 aacatccacaatacttggagttctattcacagctgtgattttggcaaccaagaatgagtt 1091
Query: 624 tccaaagatgttctctggtaaaccagtggtcataaaagaagcatcaaatctgggttactt 683
||||||| | || |||| ||||||| ||||| | || |||||||| || ||||||||
Sbjct: 1092 tccaaaggtatttactggaaaaccagcagtcatgcaggaggcatcaaagctaggttactt 1151
Query: 684 cacagcagc-acaatcttcctcaatagcatcctacctgtgcttcatggagtagcagtggg 742
| || || |||||||||||||| ||||| | ||||||||| ||||| |||||||| ||
Sbjct: 1152 cttggcggcaacaatcttcctcaacagcattcaacctgtgctccatggtgtagcagttgg 1211
Query: 743 tgcaggatggcagaccttagttgccttgattagtattggatcttactacataataggact 802
||| || ||||| | ||||||||||||| ||||| | ||||||||| | |||||
Sbjct: 1212 tgctggttggcaactgtctgttgccttgattaatattgcctgttactacatcgtgggact 1271
Query: 803 tcctgttggtgccttgcttggatacaagtttaagctaggtgttaaggggatatggacagg 862
|||| | || || ||||||| |||||||||||||| ||||||||||| |||||| ||||
Sbjct: 1272 tcctatcggcgcagtgcttggctacaagtttaagcttggtgttaagggcatatggtcagg 1331
Query: 863 aatgttggctggttatgtaattcaactattcattct 898
|||||||||||||| ||| ||||| || |||||||
Sbjct: 1332 aatgttggctggttgtgtgcttcaaatagtcattct 1367
>27504.m000640 multidrug resistance pump, putative
Length = 1596
Score = 71.9 bits (36), Expect = 7e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 478 aatgcagcaataagtgttcgagtatcgaatgagcttggagctggaaatcctaaagcagca 537
|||||||||||||||||| |||||||||||||||| ||||| || | || | | |||||
Sbjct: 1051 aatgcagcaataagtgttagagtatcgaatgagctgggagcaggtcacccaagaacagca 1110
Query: 538 aaattttcagtgttggtgactgtt 561
||||||||| || ||||| |||||
Sbjct: 1111 aaattttcactggtggtggctgtt 1134
>30170.m013980 multidrug resistance pump, putative
Length = 1452
Score = 60.0 bits (30), Expect = 3e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 460 atgattgctcttggtttcaatgcagcaataagtgttcgagtatcgaatgagcttggagct 519
||||||||||| || |||||||| || |||||||| ||||||| ||||| |||||||||
Sbjct: 919 atgattgctctaggattcaatgctgccataagtgtgagagtatcaaatgaacttggagct 978
Query: 520 gg 521
||
Sbjct: 979 gg 980
Score = 56.0 bits (28), Expect = 4e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 308 ggttttgtaaagctttcacttgcatctgctgtaatgttatgcttggag 355
|||||||| |||||||| | ||||||||||| |||||||||||||||
Sbjct: 766 ggttttgtcaagctttctttggcatctgctgttatgttatgcttggag 813