Jatropha Genome Database
- JcCA0122251.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0122251.10 - phase: 0 /partial
(538 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29863.m001055 Cellulose synthase A catalytic subunit 6 [UDP-form... 222 2e-57
29482.m000171 Cellulose synthase A catalytic subunit 3 [UDP-form... 84 1e-15
29606.m000101 Cellulose synthase A catalytic subunit 6 [UDP-form... 66 2e-10
29848.m004649 Cellulose synthase A catalytic subunit 6 [UDP-form... 64 9e-10
29637.m000754 Cellulose synthase A catalytic subunit 6 [UDP-form... 54 9e-07
>29863.m001055 Cellulose synthase A catalytic subunit 6
[UDP-forming], putative
Length = 3288
Score = 222 bits (112), Expect = 2e-57
Identities = 256/304 (84%)
Strand = Plus / Plus
Query: 23 ttgctggctctcacaacaggaatgagttcgtgcttataaatgctgatgagagcggaagaa 82
||||||| || ||||| || |||||||| |||||||| ||||||||||||| | ||||
Sbjct: 23 ttgctggttcgcacaatagaaatgagtttgtgcttatcaatgctgatgagattgcaagag 82
Query: 83 taaagtctgtgcaagaattgagtggacaagtgtgtcagatatgtggggatgagattgaga 142
| | ||||| ||||| | || || ||| | || ||||| |||||||||||||| ||||
Sbjct: 83 ttacttctgttaaagaactaagcgggcaaatttgccagatctgtggggatgagatagaga 142
Query: 143 ttacggtggatggagagccatttgttgcttgcaatgaatgtgctttccctgtgtgtaggc 202
|||| || ||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 143 ttacagtagatggggagccatttgttgcttgtaatgaatgtgcattccctgtatgtagac 202
Query: 203 cttgctatgagtatgagagaagagagggaaatcaggcctgccctcagtgcaaaactagat 262
|||||||||| ||||| |||||||||||||| | ||||||||||| |||||||| | ||
Sbjct: 203 cttgctatgaatatgaaagaagagagggaaaccgagcctgccctcaatgcaaaaccatat 262
Query: 263 acaagcgcatcaaaggtagtcctagggttgatggtgatgaggaagaagatgatattgatg 322
|||||||||||||||| |||||||| ||||| || ||||| ||||| || |||| ||||
Sbjct: 263 acaagcgcatcaaagggagtcctagagttgaaggggatgaagaagaggaggatacagatg 322
Query: 323 attt 326
||||
Sbjct: 323 attt 326
>29482.m000171 Cellulose synthase A catalytic subunit 3
[UDP-forming], putative
Length = 2934
Score = 83.8 bits (42), Expect = 1e-15
Identities = 138/170 (81%)
Strand = Plus / Plus
Query: 169 gcttgcaatgaatgtgctttccctgtgtgtaggccttgctatgagtatgagagaagagag 228
||||||||||| |||| ||| |||| ||||||||||| ||||||||||| || |||||
Sbjct: 163 gcttgcaatgagtgtggttttcctgcttgtaggccttgttatgagtatgaaaggagagaa 222
Query: 229 ggaaatcaggcctgccctcagtgcaaaactagatacaagcgcatcaaaggtagtcctagg 288
|| | || | ||||||||||||||||||||||||||||| | || || ||||| |||
Sbjct: 223 gggacccaagtttgccctcagtgcaaaactagatacaagcgtcttaaggggagtcccagg 282
Query: 289 gttgatggtgatgaggaagaagatgatattgatgatttggagcatgagtt 338
|| | || ||||| || ||||| |||| |||||| | |||||||||||
Sbjct: 283 gtggcaggagatgacgacgaagaggatacagatgatattgagcatgagtt 332
>29606.m000101 Cellulose synthase A catalytic subunit 6
[UDP-forming], putative
Length = 3258
Score = 65.9 bits (33), Expect = 2e-10
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 149 tggatggagagccatttgttgcttgcaatgaatgtgctttccctgtgtgtaggccttgct 208
||||||| || ||||| ||||||||||||| ||||| || || ||||| ||||||||||
Sbjct: 92 tggatggtgatccattcgttgcttgcaatgtttgtgcatttccagtgtgcaggccttgct 151
Query: 209 atgagtatgagagaagagagggaaatcaggcctgccctcagtgcaaaac 257
|||| ||||| || | || ||||||||| | ||||| || ||||||||
Sbjct: 152 atgaatatgaaaggaaggatggaaatcagtcttgcccacaatgcaaaac 200
>29848.m004649 Cellulose synthase A catalytic subunit 6
[UDP-forming], putative
Length = 3252
Score = 63.9 bits (32), Expect = 9e-10
Identities = 140/176 (79%)
Strand = Plus / Plus
Query: 163 tttgttgcttgcaatgaatgtgctttccctgtgtgtaggccttgctatgagtatgagaga 222
||||||||||||||||| ||||| ||||| || || | ||||| ||||| |||||| |
Sbjct: 163 tttgttgcttgcaatgagtgtgccttcccagtttgccgtccttgttatgaatatgagcgg 222
Query: 223 agagagggaaatcaggcctgccctcagtgcaaaactagatacaagcgcatcaaaggtagt 282
| ||| || | |||| | ||||| || ||||||||||| |||| | | |||||| |||
Sbjct: 223 aaagatgggactcagtcttgcccccaatgcaaaactaggtacaggaggcacaaagggagt 282
Query: 283 cctagggttgatggtgatgaggaagaagatgatattgatgatttggagcatgagtt 338
||| | || || || |||||||| ||||||||| |||||||| | ||| |||||||
Sbjct: 283 cctcgagtggagggagatgaggatgaagatgatgttgatgatctagagaatgagtt 338
>29637.m000754 Cellulose synthase A catalytic subunit 6
[UDP-forming], putative
Length = 3135
Score = 54.0 bits (27), Expect = 9e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 201 gccttgctatgagtatgagagaagagagggaaatcaggcctgccctcagtg 251
|||||| ||||||||||||||||| || ||||||||| ||| ||||||||
Sbjct: 174 gccttgttatgagtatgagagaagcgaaggaaatcagtgctgtcctcagtg 224