Jatropha Genome Database

JcCA0122171.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0122171.10 - phase: 0 /partial
         (322 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27553.m000321 Cofactor required for Sp1 transcriptional activati...   333   4e-91

>27553.m000321 Cofactor required for Sp1 transcriptional activation
           subunit, putative
          Length = 507

 Score =  333 bits (168), Expect = 4e-91
 Identities = 273/308 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctaccgctacatacccaccacccccaccttattacagactgtacaaagattactta 60
           ||||| || ||| |||| |||||||| ||||| ||||||||||| |||||||||||| ||
Sbjct: 1   atggcaactgctgcatatccaccaccaccaccgtattacagactctacaaagattacata 60

                                                                       
Query: 61  caaaaccctaagtccgctcctgagcctccccctccaattgaagggacctatgtctgtttt 120
            |||||||||| || |||||||| ||||| ||||| ||||| || |||||   |||||||
Sbjct: 61  gaaaaccctaaatcagctcctgaacctcctcctcctattgatggtacctacacctgtttt 120

                                                                       
Query: 121 ggtgccaattatactacagagtatgtgcttccaagcttagaagagcaaggcgtgcgtcag 180
           ||||||||||| ||||| || ||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 121 ggtgccaattacactactgaatatgtgcttcctagcttggaagagcaaggagtgcgtcag 180

                                                                       
Query: 181 ctctatcctaagggacctaatgttgatttcaagaaagaactgaggtcacttaatagagaa 240
           || || || || || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctttacccaaaaggccccaatgttgatttcaagaaagaactgaggtcacttaatagagaa 240

                                                                       
Query: 241 ttgcagctgcacattttggaacttgctgatgttcttgttgagagaccatcacaatatgct 300
           || ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 241 ttacagctgcacattttggagctttctgatgtacttgttgagagaccatcacaatatgct 300

                   
Query: 301 aggagagt 308
           ||||||||
Sbjct: 301 aggagagt 308