Jatropha Genome Database

JcCA0122021.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0122021.10 - phase: 0 
         (333 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30148.m001412 RNA polymerase sigma factor rpoD1, putative             208   2e-53

>30148.m001412 RNA polymerase sigma factor rpoD1, putative
          Length = 1710

 Score =  208 bits (105), Expect = 2e-53
 Identities = 216/253 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcttgtttactgccgcagtttaagtgccaaccagacactttctccatccatttcaga 60
           ||||||||||| || || ||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 4   atgtcttgtttgcttccacagtttaagtgccaacctgacactttctctatccattttaga 63

                                                                       
Query: 61  actcactatcttcaaaattctaacttttgccagtctgcaaagagtagagagccagtctgt 120
            || ||||  ||||   ||||||| ||   || ||  ||||||||||||||||  | | |
Sbjct: 64  gctaactactttcacttttctaacgttactcaatccacaaagagtagagagccgatatat 123

                                                                       
Query: 121 ttccgagcacaatgcattttgtccaccacatcaccttcaacatccactgcagttcttgat 180
           | ||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct: 124 taccgagcacaatgcattttgtccaccacatcaccatcaacatcaaccgcagtgcttgat 183

                                                                       
Query: 181 ctagagaagctgagattaccttcttttgaagctcatccagattcacttgtagcaaatagt 240
           || ||||||||||||||||||||||||||||||| | |||||||| |||   |||| |||
Sbjct: 184 ctggagaagctgagattaccttcttttgaagctccttcagattcaattgctccaaacagt 243

                        
Query: 241 ccatggacatatg 253
           |||||||||||||
Sbjct: 244 ccatggacatatg 256