Jatropha Genome Database

JcCA0118311.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0118311.10 + phase: 0 /pseudo/partial
         (622 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003410 conserved hypothetical protein                          248   3e-65
30146.m003502 Auxin-responsive protein IAA6, putative                  74   1e-12

>29794.m003410 conserved hypothetical protein
          Length = 1104

 Score =  248 bits (125), Expect = 3e-65
 Identities = 259/303 (85%), Gaps = 3/303 (0%)
 Strand = Plus / Plus

                                                                        
Query: 314  tccctattggaagaaaaataaatctcaatgcctatgacagctatcagaaactttctgtcg 373
            |||| ||||||||||||||||||||||||||||| ||||||||| | ||||| ||  | |
Sbjct: 698  tccccattggaagaaaaataaatctcaatgcctacgacagctatgaaaaactatccattg 757

                                                                        
Query: 374  ccattgatgagctcttcaggggtctgcttgcagctcaaagggaaacttgtgaagctagaa 433
            | ||||||||||||||||| || ||||||||||||||||||||||||| ||  |||||||
Sbjct: 758  ctattgatgagctcttcagtggactgcttgcagctcaaagggaaacttctgctgctagaa 817

                                                                        
Query: 434  atgtgaacaagattgatgtagcaaaaggagatgcaggt---ttaacaggaactgaaagtg 490
            || | |||| |||||||| |||||||| || |||||||   | | |||||  || || ||
Sbjct: 818  atataaacaggattgatgaagcaaaagcagctgcaggttcatcatcaggagttggaaatg 877

                                                                        
Query: 491  gggaatatactcttgtttatcaggatagtgaaggtgacacgatacttgttggggatgtcc 550
            | |||||||| || || ||  ||||||||||||| |||| |||||||||||| |||||||
Sbjct: 878  gagaatatacgctagtgtacgaggatagtgaaggcgacaggatacttgttggagatgtcc 937

                                                                        
Query: 551  cttggcaaatgtttgtaagtacagcaaaaaggctgcgcgtgctgaagagctctgaacttt 610
            | ||||| |||||||||   |||||||| |||||||||||||||||||||||||||||||
Sbjct: 938  cctggcacatgtttgtatcaacagcaaagaggctgcgcgtgctgaagagctctgaacttt 997

               
Query: 611  cca 613
            |||
Sbjct: 998  cca 1000


>30146.m003502 Auxin-responsive protein IAA6, putative
          Length = 963

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                       
Query: 490 ggggaatatactcttgtttatcaggatagtgaaggtgacacgatacttgttggggatgtc 549
           ||||||||||| ||||||||| | ||||  ||||| |||| ||| |||||||||||||||
Sbjct: 823 ggggaatatacccttgtttatgaagataacgaaggagacaggatgcttgttggggatgtc 882

                            
Query: 550 ccttggcaaatgtttgt 566
           || ||||| ||||||||
Sbjct: 883 ccgtggcacatgtttgt 899