Jatropha Genome Database

JcCA0117331.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0117331.10 - phase: 1 /pseudo
         (1193 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006314 Casbene synthase, chloroplast precursor, putative        68   1e-10
29910.m000944 Terpinolene synthase, chloroplast precursor, putative    64   2e-09
30065.m001152 Casbene synthase, chloroplast precursor, putative        58   1e-07
29827.m002614 Casbene synthase, chloroplast precursor, putative        54   2e-06

>30169.m006314 Casbene synthase, chloroplast precursor, putative
          Length = 1668

 Score = 67.9 bits (34), Expect = 1e-10
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 61  tgaagggcattctcagcttatatgaagcaagttctgtaagtgtgcacggagaagatattc 120
           |||| ||| |||| |||||||| ||||| |||| | |||||||||| |||||| ||||||
Sbjct: 431 tgaaaggccttcttagcttatacgaagcgagttttctaagtgtgcatggagaaaatattc 490

                     
Query: 121 tagatgaagc 130
           ||||||||||
Sbjct: 491 tagatgaagc 500



 Score = 65.9 bits (33), Expect = 5e-10
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                        
Query: 894  catgaggatgagcaaaagaggggagacngtgcttcaagtgtagagtgttacaaaaaggaa 953
            |||||||||||||||||||||||| |  ||||||||||| |||| || ||||  || |||
Sbjct: 1369 catgaggatgagcaaaagaggggacattgtgcttcaagtatagaatgctacatgaaagaa 1428

                    
Query: 954  tatggtgt 961
            ||||||||
Sbjct: 1429 tatggtgt 1436


>29910.m000944 Terpinolene synthase, chloroplast precursor, putative
          Length = 1431

 Score = 63.9 bits (32), Expect = 2e-09
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 97  taagtgtgcacggagaagatattctagatgaagctcttacttttacaa 144
           |||||||||| |||||||||||| |||||||||| ||| |||||||||
Sbjct: 377 taagtgtgcatggagaagatattttagatgaagcacttgcttttacaa 424


>30065.m001152 Casbene synthase, chloroplast precursor, putative
          Length = 849

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 142/180 (78%)
 Strand = Plus / Plus

                                                                        
Query: 859  agattattggtcgtttgttgaacgatacagtatcgcatgaggatgagcaaaagaggggag 918
            |||| ||||||||| || |||| || | || ||| |||||||||||||||||||||||| 
Sbjct: 515  agatgattggtcgtctgatgaatgacatagcatcccatgaggatgagcaaaagaggggac 574

                                                                        
Query: 919  acngtgcttcaagtgtagagtgttacaaaaaggaatatggtgttacagaagaaatggcag 978
            |  |||||||   | ||||||| || |  ||  ||||||||||| ||||| | |  ||  
Sbjct: 575  attgtgcttcggctatagagtgctatatgaaccaatatggtgtttcagaaaagaaagcca 634

                                                                        
Query: 979  ttgaagagatattggaaatttgtggaaatgcatggaaagacattaatgaagaatgcatga 1038
            ||||||||||   | |||| |||||| |||||||||||||||| || || || |||||||
Sbjct: 635  ttgaagagattcagaaaatatgtggatatgcatggaaagacataaaagaggactgcatga 694


>29827.m002614 Casbene synthase, chloroplast precursor, putative
          Length = 1656

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                        
Query: 897  gaggatgagcaaaagaggggagacngtgcttcaagtgtagagtgttacaaaaaggaatat 956
            ||||| |||||||||||||||||| |  |||||||||| ||||| ||||  || ||||||
Sbjct: 1363 gaggaagagcaaaagaggggagactgcccttcaagtgtggagtgctacatgaatgaatat 1422

              
Query: 957  gg 958
            ||
Sbjct: 1423 gg 1424