Jatropha Genome Database

JcCA0117111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0117111.10 - phase: 0 /pseudo
         (342 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001428 AMP dependent ligase, putative                           72   2e-12
29830.m001420 AMP dependent ligase, putative                           50   9e-06

>29830.m001428 AMP dependent ligase, putative
          Length = 1635

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 159/200 (79%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagggtcttattcattgctctgtaaattacgttcctttatctcctataagcttcttg 60
           |||||||||||| ||  |||||||  |||||| ||||||||||||||||  || ||||| 
Sbjct: 1   atggagggtcttgtttgttgctctacaaattatgttcctttatctcctacgagtttctta 60

                                                                       
Query: 61  gaacgagcagctaagatatatggagacaggaaatctgttatttatggttctttggagtac 120
           ||  ||||||| ||| | ||| |||||||||  |||||| ||||||||  | |  |||| 
Sbjct: 61  gagagagcagcaaaggtttatagagacaggacttctgttgtttatggtgatgtcaagtat 120

                                                                       
Query: 121 agttggagtgaaacctataaccgttgtcttgggctggcttctgtcttgacacagttggga 180
              ||||||| ||| ||| | |||||| ||  ||| ||||||| |||| | |||||||||
Sbjct: 121 tcctggagtggaacttatgatcgttgtgttaagcttgcttctgccttggctcagttggga 180

                               
Query: 181 atttctaatggcgatgtggt 200
           |||||| |||| ||||||||
Sbjct: 181 atttctcatggtgatgtggt 200


>29830.m001420 AMP dependent ligase, putative
          Length = 228

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                   
Query: 1  atggagggtcttattcattgctctgtaaattacgttcctttatctcctataagcttc 57
          |||||||| ||| |||||||||||| |||||| || |||||| | || |||||||||
Sbjct: 1  atggagggccttcttcattgctctgcaaattatgtacctttaacaccaataagcttc 57