Jatropha Genome Database
- JcCA0097961.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0097961.10 + phase: 0 /partial
(1235 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29646.m001075 splicing factor u2af large subunit, putative 1086 0.0
>29646.m001075 splicing factor u2af large subunit, putative
Length = 1650
Score = 1086 bits (548), Expect = 0.0
Identities = 797/880 (90%)
Strand = Plus / Plus
Query: 351 caaacggatcagtggttttgatatggctcctcctccatctgcaatgttggctggtgcagc 410
|||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 552 caaaaggatcagtggttttgatatggctcctcccccatctgcgatgttaactggtgcagc 611
Query: 411 tgcagcagctgctgctgcaggtcagattcctgggacaaatcctgctatttctggaatgtt 470
|| | |||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct: 612 ggcggtggctgctgctgcaggtcagattcctgggacagctcctgctattccaggaatgtt 671
Query: 471 tccaaatatgttccctttaggaactggtcagcagtttggtgctcttcctgttatgccagt 530
|| || ||||| |||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 672 ccccaacatgtttcctttagggactggtcagcagtttggtactcttcctgttatgccagt 731
Query: 531 tcaagcaatgacacaacaggctaccaggcatgctcggcgggtatatgttggaggacttcc 590
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 732 tcaagcaatgacacagcaggctactaggcatgctcggcgggtatatgttggagggcttcc 791
Query: 591 ccctactgctaacgaacagtccgtagcaaccttttttagccaagttatggctgcaattgg 650
||||| ||||| |||||||| |||||||| ||||| ||||| || |||||||| |||||
Sbjct: 792 tcctacagctaatgaacagtctgtagcaacatttttcagccatgtaatggctgctattgg 851
Query: 651 gggaaacactgctggtcctggtgatgctgttgtgaatgtctatattaatcatgaaaagaa 710
|| || ||||| || || || ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 852 agggaatactgcaggcccaggcgatgctgttgtaaatgtttatattaatcatgaaaagaa 911
Query: 711 gtttgcatttgtggagatgagatctgttgaggaggccagtaatgcaatggctttggatgg 770
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 912 gtttgcatttgtggagatgagatctgttgaggaggctagcaatgcaatggctttagatgg 971
Query: 771 gattatttttgagggggcacctgtcaaggtgaggagacctagtgactataatccttctct 830
|||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 972 gattatctttgagggagctcctgtcaaggtgaggagacctagtgactataatccgtctct 1031
Query: 831 tgctgcaacacttggtccaagccagcccaatcccaatctgaacctggctgcagttggttt 890
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 1032 tgctgctacacttggtccaagccagcccaatccaaatctgaacctgggtgcagttggcct 1091
Query: 891 aaccccaggctcggctggtggactcgagggtccagaccgcatatttgtcggtggacttcc 950
||| |||||||| |||||||| || ||||||||||||||||| ||||| ||||| |||||
Sbjct: 1092 aactccaggctctgctggtgggcttgagggtccagaccgcatctttgtgggtgggcttcc 1151
Query: 951 ttattacttcacagaggcacaaatcagagagttattggaatcttttgggcctctacgggg 1010
||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||| || ||
Sbjct: 1152 ttattactttacagaagcacaaatcagggagttgttggaatcttttgggcctcttcgagg 1211
Query: 1011 ttttgatctagttaaagacagagaaactgggaactcaaaaggatacgcattttgtgttta 1070
|||||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1212 ttttgatctagtcaaagatagggaaactgggaactcaaaaggatatgcattctgtgttta 1271
Query: 1071 ccaagatctttcagttacagacatagcttgcgctgcccttaatggaatcaaaatgggtga 1130
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct: 1272 tcaagatctttcagttacagacatagcttgtgctgccctgaatggaataaaaatgggtga 1331
Query: 1131 taaaactctcacagtcaggcgtgccaaccagggtgctaaccaacctaagcctgagcaaga 1190
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1332 taaaactctcactgttaggcgtgccaaccaaggtgctaaccaacctaagcctgagcaaga 1391
Query: 1191 gaatgtactattgcatgcacaacagcaaattgccttgcag 1230
|| |||||| |||||||| || ||||| ||||| ||||||
Sbjct: 1392 gactgtactgttgcatgcccagcagcagattgctttgcag 1431