Jatropha Genome Database

JcCA0088501.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0088501.10 + phase: 2 /partial
         (289 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29827.m002661 9-cis-epoxycarotenoid dioxygenase, putative             131   2e-30

>29827.m002661 9-cis-epoxycarotenoid dioxygenase, putative
          Length = 1857

 Score =  131 bits (66), Expect = 2e-30
 Identities = 182/221 (82%)
 Strand = Plus / Plus

                                                                        
Query: 65   gagcccttctttgtggcaagacaacctgaaaacccagaagctgaggaggatgatgggtat 124
            ||||| ||||||||||||||  | ||||| ||   ||| || |||||||||||||| | |
Sbjct: 1633 gagcctttctttgtggcaagggagcctgacaatatagacgcagaggaggatgatggattt 1692

                                                                        
Query: 125  ttggtgtcatatgttcatgatgagataaacggagagtctaagttcttggtaatggacgca 184
             ||||||||||||| |||||||| ||    ||||| || ||||||||||||||||| || 
Sbjct: 1693 gtggtgtcatatgtacatgatgaaattgctggagaatccaagttcttggtaatggatgcg 1752

                                                                        
Query: 185  aagtccccgaatcttgatattgtggcagccgttaaattgccacggcgagttccttatggc 244
            |  || || |||||||| || ||||||||||| |   |||| ||||||||||| ||||||
Sbjct: 1753 agatcacctaatcttgacatagtggcagccgtgaggctgccccggcgagttccatatggc 1812

                                                     
Query: 245  ttccatggactttttgtgnaggaaagtgacctcaaaaagct 285
            ||||||||||||||||||  ||||| |||||| ||||||||
Sbjct: 1813 ttccatggactttttgtgagggaaaatgacctgaaaaagct 1853