Jatropha Genome Database

JcCA0081341.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0081341.20 - phase: 0 /pseudo/partial
         (312 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001559 60S ribosomal protein L10a, putative                     82   2e-15
30055.m001561 60S ribosomal protein L10a, putative                     72   2e-12

>30055.m001559 60S ribosomal protein L10a, putative
          Length = 429

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                       
Query: 233 acttgcccgctttgttaaggccaggacccaaaagacgaggaatctgcttgatgacagatt 292
           ||||||| || ||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 427 acttgcctgccttgttcagcccagggcccaaaagacgaggaatctgcttgatgacagatt 368

            
Query: 293 c 293
           |
Sbjct: 367 c 367


>30055.m001561 60S ribosomal protein L10a, putative
          Length = 657

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                       
Query: 253 ccaggacccaaaagacgaggaatctgcttgatgacagattcagaagctaaaaatgcatgg 312
           ||||| |||||||| |||||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 398 ccagggcccaaaaggcgaggaatctgcttgatgacagattccgaagccaagaaagcatgg 339