Jatropha Genome Database

JcCA0081131.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0081131.20 + phase: 0 
         (762 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014286 conserved hypothetical protein                           98   9e-20

>30170.m014286 conserved hypothetical protein
          Length = 828

 Score = 97.6 bits (49), Expect = 9e-20
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                       
Query: 682 aaagaagttaatctatggaagagaagaaccatgaatccacctaaacctcttcaattgaat 741
           |||||||||||||| |||  ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 748 aaagaagttaatctgtggcggagaagaaccatgaatccacctaaacctcttcagttgaat 807

                                
Query: 742 ttaggggtcagaacaacttga 762
            ||  ||| ||||||||||||
Sbjct: 808 gtaatggttagaacaacttga 828



 Score = 91.7 bits (46), Expect = 6e-18
 Identities = 144/178 (80%), Gaps = 9/178 (5%)
 Strand = Plus / Plus

                                                                       
Query: 413 gaaggagatctgatgcttctatctatgataggccaccactttctgata---------gag 463
           |||| ||||||||||||||||| ||||||| |||||| ||| ||||||         |||
Sbjct: 464 gaagaagatctgatgcttctatgtatgataagccaccgcttactgatactagtcatagag 523

                                                                       
Query: 464 cgccttctttgggtcaaatgaagcggtttgcgagcggtcgcgatactttttcgaattttg 523
           | ||| | ||| ||||| ||||| ||||||| |||||||| ||||||||| | |||||||
Sbjct: 524 ctcctgccttgagtcaattgaagaggtttgcaagcggtcgtgatacttttgctaattttg 583

                                                                     
Query: 524 attggacggctcagattacaccggtggaatcagatcaccgagattattcttctgatga 581
           |||||||| ||||| ||   |||| ||||||||||||| |  |||||| |||||||||
Sbjct: 584 attggacgtctcaggttgtcccggcggaatcagatcacaggaattattattctgatga 641



 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                       
Query: 206 ccaagaatggaagttttgagacccaagaacccacctcgcctaaggtgtcatgcattggcc 265
           ||||||||||||| ||||| | ||| ||||| || || |||||| | || ||||| ||||
Sbjct: 230 ccaagaatggaagctttgaaaaccatgaaccgacatcacctaagatttcttgcatgggcc 289

                                 
Query: 266 aaatcaagcacaagaagaagat 287
           ||||||||||||||||||||||
Sbjct: 290 aaatcaagcacaagaagaagat 311