Jatropha Genome Database
- JcCA0080751.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0080751.10 + phase: 2 /pseudo/partial
(1420 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30131.m006923 Transportin-3, putative 1292 0.0
>30131.m006923 Transportin-3, putative
Length = 3063
Score = 1292 bits (652), Expect = 0.0
Identities = 1131/1296 (87%)
Strand = Plus / Plus
Query: 111 agatccagagtgaaggatattatttgcagttaggagtcaaagatgctttattaaatgctc 170
|||||||||| ||||||||| ||||||| |||||| || |||||||||||||||||||
Sbjct: 227 agatccagagcgaaggatatcatttgcatataggagctaaggatgctttattaaatgctc 286
Query: 171 ttcttgtggctgccaaaagatttagttcaggccctccccagcttttgactcaaatttgtc 230
|||||||||||||| ||||||||||||| || |||| |||||| ||||| ||||| || |
Sbjct: 287 ttcttgtggctgcccaaagatttagttctggtcctctccagctattgacacaaatctgcc 346
Query: 231 ttgcacttgctgcccttatactacgtgctgctgagcatggaaaacctattgagcagcttt 290
|||||||| |||||||| |||| ||||||| ||||||||||||||||||||| |||||||
Sbjct: 347 ttgcactttctgcccttgtacttcgtgctgttgagcatggaaaacctattgaacagcttt 406
Query: 291 tttacagccttcggactctgcagaaccaggatgatagtaatatggctgttctggagatgc 350
| |||||||||| |||||||||||||||||| ||| ||||| | |||||| | |||||||
Sbjct: 407 tctacagccttcagactctgcagaaccaggaagatggtaatgttgctgttttagagatgc 466
Query: 351 ttactgttctcccagaagaagttgttgacactcaaaatgctgatggtaacattagtccag 410
| |||||||| ||||||||||||||||||||||||||| ||||| ||| || |||| ||
Sbjct: 467 tcactgttcttccagaagaagttgttgacactcaaaattctgatagtagtatcagtcaag 526
Query: 411 ctcatagaagccagtatggccaagagcttctttctcatactcctacggtgcttgagttcc 470
| |||||||||||||||||| |||||||||| || ||||||||||||||||| |||||||
Sbjct: 527 cccatagaagccagtatggcaaagagcttctctcacatactcctacggtgctcgagttcc 586
Query: 471 tcctggagcaatctcagaaaacatatgatggtggtattcaactgcatgagaggaatagaa 530
| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 587 tgctgggacaatctcagaaaacatatgatggtggtattcaattgcatgaaaggaatagaa 646
Query: 531 aagttctccgatgcttgctgagttgggtacgagctgggtgcttctcagaaattccacaag 590
||||||| || ||||| || |||||||| ||||| |||||||| ||||||||||| ||||
Sbjct: 647 aagttcttcgttgcttactcagttgggttcgagcggggtgcttttcagaaattccccaag 706
Query: 591 gctcactaccaacacatccacttcttaattttgtattcaattctttgcaggtttcgtctt 650
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 707 gctcactaccaacacatccacttcttaactttgtattcaactctttgcaggtttcctctt 766
Query: 651 catttgatttggcaattgaagtgcttgttgaacttgcaagtcgacatgagggtctacctc 710
| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 767 cttttgatttggcaattgaagtgcttgttgaacttgcaagtcgatatgaggggctacctc 826
Query: 711 aggttttgttatgcagagtacattttcttaaagaggtactcctcctacctgctctcaaca 770
||||||||||||| |||| ||||| ||||||||||||||||| || || ||||||| |
Sbjct: 827 aggttttgttatgtcgagtccatttccttaaagaggtactccttcttccagctctcagta 886
Query: 771 atggagacgagaagataatcagtggtcttgcatgcttgatgtctgaaattgggcaggctg 830
|| |||| ||||| |||||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct: 887 atagagatgagaaagtaatcaatggtcttgcgtgcttgatgtcagaaattgggcaggctg 946
Query: 831 caccatctctgattgtggaggcaagtgtcgaggcacttgcgctggcagattcgctactga 890
|||| ||||||||||||||||||||||| ||||||||||| ||| | ||| ||||| |||
Sbjct: 947 caccgtctctgattgtggaggcaagtgttgaggcacttgctctgacggatgcgctattga 1006
Query: 891 gctgtgtagcatttccaagtgaagactgggagattgcagactcaacattgcagttttggt 950
||||||| ||||||||||||| ||| ||||| |||||||||||||||||||| |||||||
Sbjct: 1007 gctgtgtggcatttccaagtgcagattgggaaattgcagactcaacattgcaattttggt 1066
Query: 951 ctacacttgcaagctatattctcagccctgatacagagagttcaaaaaatgggaaacatg 1010
||||||||||||||||||| || ||| |||| | |||||| || |||||||||||||
Sbjct: 1067 ctacacttgcaagctatatacttggccttgatgcggagagtgtgaagaatgggaaacatg 1126
Query: 1011 tggaagatgtgnnnnnnnnnnnnnnnnctgcattgcttgatgctcttttattgcgtgctc 1070
|| |||||||| | ||||| ||||||||||||||| |||||| ||
Sbjct: 1127 tgcaagatgtgtttttttctgtattttcagcattacttgatgctcttttaatgcgtgttc 1186
Query: 1071 aggttgatgaatctacatttaatgatgatagtggaatgcttgacctgccagatggtcttg 1130
||||||| ||||||| ||||||||||| | |||||||||||||||||||||||| ||||
Sbjct: 1187 aggttgacgaatctatatttaatgatgcaaatggaatgcttgacctgccagatggccttg 1246
Query: 1131 tccagttcaggatgaatcttgcagaacttttggtggatatttgtcaattactaagacctg 1190
| |||||||||| ||||||||| || || ||||||||||||||||| || |||||||||
Sbjct: 1247 tacagttcaggacgaatcttgcggagctattggtggatatttgtcagctattaagacctg 1306
Query: 1191 tgacatttgtacaaaagcttttctttggtggatgggcatctgtaaatataccagtgcctt 1250
| |||||||| ||||||||||| || ||||| |||||||||| || | ||||||| || |
Sbjct: 1307 tcacatttgtgcaaaagcttttgttcggtggctgggcatctggaagtgtaccagtaccct 1366
Query: 1251 ggaaagaggtggaagccaaattgtttgctcttaatgtggtctctgaagtagtccttcagg 1310
|||| ||||||||||||||| |||||| |||||||||||| ||||||||||| || ||||
Sbjct: 1367 ggaaggaggtggaagccaaactgtttgttcttaatgtggtttctgaagtagttctccagg 1426
Query: 1311 aggcccagacttttgacttttcggtgatcatacagttggcaactatgttgtctattaggc 1370
||| || ||| ||||||||||| ||||||| |||||||| ||| ||||||||| ||| |
Sbjct: 1427 agggccggacctttgacttttcaatgatcatgcagttggcgactttgttgtctagtagcc 1486
Query: 1371 cttcagacaagctcaagggattcatgtgcattgtat 1406
|||| || |||| ||||| || |||||||||||||
Sbjct: 1487 cttctgaaaagcacaaggagttaatgtgcattgtat 1522