Jatropha Genome Database
- JcCA0079871.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0079871.20 - phase: 2 /pseudo/partial
(1117 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28470.m000438 ap endonuclease, putative 472 e-132
>28470.m000438 ap endonuclease, putative
Length = 1461
Score = 472 bits (238), Expect = e-132
Identities = 429/490 (87%), Gaps = 2/490 (0%)
Strand = Plus / Plus
Query: 577 tagcttctggacatgtagccgttccaaacttggttattcaggcactgcaattatctctcg 636
|||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||
Sbjct: 852 tagcttctggacgtgtagccattccaaacttggttattcaggcactgccattgtctctcg 911
Query: 637 gataaagccaatttcagtaagctatggtctaggcataccagatcatgatagtgagggaag 696
| |||||||| |||| || ||||||||||| |||||| |||| ||||||||||| |||||
Sbjct: 912 ggtaaagccactttctgtcagctatggtctgggcatagcagaccatgatagtgaaggaag 971
Query: 697 acttgtgacagcagagtttgattcattctatttaataagcgcatatgtcccaaactctgg 756
|||||||||||| || ||||||||||||||| || ||| |||||||| || ||||||||
Sbjct: 972 acttgtgacagcggaatttgattcattctatctattaaatgcatatgttcctaactctgg 1031
Query: 757 agatggattgaaaagactgtcatacagaattggagaatgggatctgtctcttagcaacta 816
||||||||| ||| ||||||||||||| || | |||||||| ||||||||||||||
Sbjct: 1032 agatggattaaaacgactgtcatacagggtttctcagtgggatctttctcttagcaacta 1091
Query: 817 cttgaaagagctggaaaagtcaaagcctgtcattttgactggagatttgaattgtgcaca 876
|||| || |||||||||||||| || |||||||||| ||| ||| |||||||||| ||
Sbjct: 1092 tatgaaggaactggaaaagtcaaaaccagtcattttgaatggtgatctgaattgtgctca 1151
Query: 877 tcaagagatagatatttacaaccctgctggaaatagaagaagtgctggatttacagatga 936
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1152 tcaagagatagatatttacaaccctgctggaaatagaagaaatgctgggtttacagatga 1211
Query: 937 agaaaggcaatcatttgggacaaaactttttgtcaaggggatttgtggatactttcagaa 996
|||||| |||||||||| || |||||||||||| |||||||||||||||| ||| ||||
Sbjct: 1212 agaaagacaatcatttgaaac-aaactttttgtcgaggggatttgtggatagttttagaa 1270
Query: 997 aacaacatccaaaatgttataggctatacttactggggttatcgacatggcgggcgcaaa 1056
|||| ||||| | ||| | ||||| ||||||||||||||||||||||| || || |||
Sbjct: 1271 aacagcatcc-tgacgttgttggctacacttactggggttatcgacatggtggacggaaa 1329
Query: 1057 accaataaag 1066
|| |||||||
Sbjct: 1330 actaataaag 1339
Score = 198 bits (100), Expect = 5e-50
Identities = 175/200 (87%)
Strand = Plus / Plus
Query: 326 gctgaaccctggacaattcttgcccacaagaagccgcagaaaggttggattccatataat 385
|||||||| |||||||||||||| ||||||||||| |||||| |||||||| |||| |||
Sbjct: 604 gctgaaccttggacaattcttgctcacaagaagcctcagaaaagttggattgcatacaat 663
Query: 386 cctggaaccatgaggcccccgcctcccgctggggacacaaagtttgtgaagctaatgtct 445
|| ||||||||||||| || |||| || | ||| |||||||||||||| |||||||||
Sbjct: 664 cccagaaccatgaggcctccacctcttgccgaggatacaaagtttgtgaaactaatgtct 723
Query: 446 tggaatgtcaatgggttaagagcattattaaagtcagagggattttctgcccttgaactt 505
||||| || ||||||||||||||| | ||||||| ||||||||| || || ||||||||
Sbjct: 724 tggaacgtaaatgggttaagagcactgttaaagttagagggattctcagctgttgaactt 783
Query: 506 gcccaaagagaaaattttga 525
||||||||||||||||||||
Sbjct: 784 gcccaaagagaaaattttga 803
Score = 81.8 bits (41), Expect = 8e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 14 cctgccaaaggtcgtaaatctgaccttgtctctgctttaaagttttttgtgagcaagcac 73
|||||||||||||| ||||| || || || ||| ||||||||| |||||| |||||||
Sbjct: 235 cctgccaaaggtcgcaaatcagagctggtatcttctttaaagtcctttgtggacaagcac 294
Query: 74 ttggatggtgaaagctctcaggaag 98
|||||||||||||||||| ||||||
Sbjct: 295 ttggatggtgaaagctctaaggaag 319
Score = 56.0 bits (28), Expect = 5e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1067 cctgatgttaatggaagtgatcattgtccaattgggctaatactcaag 1114
|||||||||| ||| ||||||||||| |||||||| ||| ||||||||
Sbjct: 1408 cctgatgttactggcagtgatcattgcccaattggcctagtactcaag 1455
Score = 54.0 bits (27), Expect = 2e-06
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 157 taatgtatctgatgaaaaactcaatactgtttcagaggatttgtgttttaaacagagtaa 216
|||||||| ||||||||| ||| || || |||||| | || ||| |||||||||||||
Sbjct: 378 taatgtatgtgatgaaaacatcagtattgcttcagaagtttcatgtcttaaacagagtaa 437
Query: 217 gagaagggtgaaacaatct 235
|||| |||||||||||||
Sbjct: 438 tagaaaggtgaaacaatct 456