Jatropha Genome Database

JcCA0079611.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0079611.30 + phase: 0 /pseudo/partial
         (1262 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29630.m000832 ubiquitin-protein ligase, putative                      109   4e-23

>29630.m000832 ubiquitin-protein ligase, putative
          Length = 1245

 Score =  109 bits (55), Expect = 4e-23
 Identities = 91/103 (88%)
 Strand = Plus / Plus

                                                                       
Query: 114 ccgagttcccgtcgagtctctcctgcgcttcaggtgcgtgtcaaagtcatggtgtgccca 173
           |||| |||| ||||| | |||||||||||||||||   | |||||||||||||||||  |
Sbjct: 45  ccgacttcctgtcgattgtctcctgcgcttcaggtctatatcaaagtcatggtgtgcaaa 104

                                                      
Query: 174 aatcgacaacccaaatttcatcaaaacccatttgaaaaaatca 216
           ||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 105 aatcgacgacccaaatttcatcaaaacacatttgaaaaaatca 147



 Score = 79.8 bits (40), Expect = 4e-14
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                       
Query: 679 atgtcttacatgcttggtattgatcagaagatgggtgtgcttgtgggcgatgctttgcat 738
           ||||||| |||  ||||| ||||||||||||||||||||||||| || || |||||||||
Sbjct: 583 atgtcttgcattattggttttgatcagaagatgggtgtgcttgttggtgaagctttgcat 642

                       
Query: 739 tggctagtgagt 750
           ||||||| ||||
Sbjct: 643 tggctagcgagt 654



 Score = 73.8 bits (37), Expect = 2e-12
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                       
Query: 393 ggttcctgtaatgggttgatatgctttggggatgctgttggaaggattgttttgatgaac 452
           ||||| |||||||||||| ||||||||||  |||||  |||||| |||  ||| ||||||
Sbjct: 298 ggttcttgtaatgggttgttatgctttggtaatgctagtggaagaattactttaatgaac 357

                                        
Query: 453 ccagtaactagaaagcatcaagttttgcc 481
           |||  ||||||||||||| ||||||||||
Sbjct: 358 ccatcaactagaaagcataaagttttgcc 386



 Score = 56.0 bits (28), Expect = 5e-07
 Identities = 112/140 (80%)
 Strand = Plus / Plus

                                                                        
Query: 940  cttgatgtttgggtgatgaaggaatatgatgtgaaagagtcttggactaagctcttttcg 999
            |||||| ||||||||||||| |||||||  | ||| || ||||||||||  || ||||||
Sbjct: 838  cttgatatttgggtgatgaaagaatatggagcgaaggattcttggactagactgttttcg 897

                                                                        
Query: 1000 gtcacatcaaatgaactgtcatctttaaaatgtatgaggactttagctttctctaacaat 1059
             ||||| |||||| | || ||| | | |||||| |||| || |||| |||||| || |||
Sbjct: 898  ttcacaccaaatgtagtgccatttgtgaaatgtttgagaacattagttttctcaaagaat 957

                                
Query: 1060 ggttatgaacttctattggg 1079
             || ||||| || |||||||
Sbjct: 958  cgtgatgaagttttattggg 977