Jatropha Genome Database

JcCA0077471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0077471.10 - phase: 0 
         (267 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014448 ribosomal pseudouridine synthase, putative              238   1e-62

>30147.m014448 ribosomal pseudouridine synthase, putative
          Length = 1158

 Score =  238 bits (120), Expect = 1e-62
 Identities = 198/224 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagagaaagagggaagaagaaaacagaaacgacatggaaattgtgtggcaaacgcca 60
           |||||||||||||| ||||||||||||| |||||||||||| || || ||||||||||||
Sbjct: 1   atgaagagaaagagagaagaagaaaacaaaaacgacatggagatagtatggcaaacgcca 60

                                                                       
Query: 61  gcgaacccaccggaaaaacaagactacatcattcgcgatgggaggcgccacgtgagacct 120
           || || ||||| || ||||| || |||||  |||||||||||||||||||||| ||||||
Sbjct: 61  gccaatccacctgagaaacacgattacatttttcgcgatgggaggcgccacgtcagacct 120

                                                                       
Query: 121 taccacttcgagttcatctctcatgttaagaatcgttgggcgggaaagaccatagttgat 180
           ||| | ||||||||||| ||||||| |||||||||||||||||||||||| || ||||||
Sbjct: 121 tactatttcgagttcatttctcatgctaagaatcgttgggcgggaaagacgattgttgat 180

                                                       
Query: 181 ttgtttgcagaagagttcaaaggccgaccttatgagtactatgt 224
           || || || ||||||||||||||| ||||||| || ||||||||
Sbjct: 181 ttattcgcggaagagttcaaaggcagaccttacgattactatgt 224