Jatropha Genome Database
- JcCA0077451.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0077451.10 - phase: 0 /pseudo
(1668 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29648.m002006 DNA binding protein, putative 712 0.0
>29648.m002006 DNA binding protein, putative
Length = 2316
Score = 712 bits (359), Expect = 0.0
Identities = 607/689 (88%), Gaps = 3/689 (0%)
Strand = Plus / Plus
Query: 562 tctggcaaatcaccagatcatacaccagagaaatacatggaatgtaggaactaccttgtt 621
||||| |||||||| |||||||| || |||||||||||||||||||| ||||| |||||
Sbjct: 655 tctggaaaatcacctgatcatacgcctgagaaatacatggaatgtagaaactatattgtt 714
Query: 622 gctaaatacatggacaatccagagaagaggatcacagtttctgattttcagggagtggta 681
||||||||||||| |||||||||| ||||||| |||||||||||| ||||||| | |||
Sbjct: 715 gctaaatacatggggaatccagagaggaggatcgcagtttctgattgtcagggatttgta 774
Query: 682 tttggtattgataacgaagatttaactcgaattgttaggtttcttgatcactggggaatt 741
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 775 gttggtattgaaaatgaagatttaactcgaattgttaggtttcttgatcaatggggaatc 834
Query: 742 atcaattactgtgcagccccaccaaaccgtgaatcctggaatggtggatcctacttaaga 801
||||| ||||||||||||||| ||| |||||||| |||| |||||| || ||||||||
Sbjct: 835 atcaactactgtgcagccccatcaagtcgtgaatcttggagtggtgggtcgtacttaagg 894
Query: 802 gaggatccaaatggcgaggttcatgtgccatcagctgctttaaagtccattgatagtctg 861
||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| ||| ||
Sbjct: 895 gaggacccaaatggtgaggttcatgttccatcagctgctttaaagtcaattgacagtttg 954
Query: 862 atcaaatttgacaagcccacatgtaggctcaaggtagctgacctttattcatcattgcca 921
||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||| ||
Sbjct: 955 atcaaatttgacaagcccagatgtagcctcaaggcagctgaaatttattcatcattgtca 1014
Query: 922 tgtcacgatgccgatttctctgacttggacaacaaaattcgagagcgcctatctgaaaat 981
| ||| ||| ||||||||||||||||||| || ||| |||||||| |||||||||||
Sbjct: 1015 tatcatgat---gatttctctgacttggacagcagaatccgagagcgtttatctgaaaat 1071
Query: 982 cattgcacttattgttctcagcctcttcctggcatttactatcagtcgcagaaggagatt 1041
||||||||||| ||||||||| ||||||| | | || |||||||| || |||||||||
Sbjct: 1072 cattgcacttactgttctcagtctcttcccagtgtatattatcagtcacaaaaggagatt 1131
Query: 1042 gatgtcctgctatgctctgattgcttccatgaggggaggtttgtaactggacattcgacc 1101
||| | || ||||||||||| ||||| || |||||||||||||| || | ||||| | |
Sbjct: 1132 gatatactactatgctctgactgctttcacgaggggaggtttgtgaccagtcattcaagc 1191
Query: 1102 ctggattttataaagatggatccaaccaaggattatggtgatttggatggagagagttgg 1161
| |||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||
Sbjct: 1192 ttagattttataaagatggatcccaccaaggattacggtgatttagacggagaaagttgg 1251
Query: 1162 agtgatcaggaaacactattgctgcttgaggcaatggaaatttacaatgaaaattggaat 1221
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1252 agtgatcaggaaacactactgctgcttgaggcaatggaaatttacaatgataattggaat 1311
Query: 1222 gaaattgcagaacatgttggaacaaaatc 1250
||||||||||||||||||||| |||||||
Sbjct: 1312 gaaattgcagaacatgttggatcaaaatc 1340
Score = 71.9 bits (36), Expect = 1e-11
Identities = 173/218 (79%), Gaps = 3/218 (1%)
Strand = Plus / Plus
Query: 231 gatggtggggttcgcatatgtgacttcccttgtgttactaagcttgtggtgaatcgccct 290
||||||||||| |||||||| || ||||||||||| || |||||| | |||||||| ||
Sbjct: 268 gatggtggggtccgcatatgcgatttcccttgtgtaacaaagcttcttgtgaatcggccc 327
Query: 291 catgcgtctgttttcgctattgcggctatagagagggctaatttatctggggagagtagt 350
||||| ||||||| || |||| |||| |||| || || |||| | ||| ||||| ||
Sbjct: 328 catgcttctgtttcagcaattgtggctttagaaagagcgaattcaggtggagagagcagc 387
Query: 351 agtaatagagggca---ggtgccgaatttggagaatgtgtcttacgggcagctgcaggca 407
|| | || |||||| |||||| ||||||||||| ||||||| || ||||| |||||
Sbjct: 388 agcagtaaagggcaggtggtgcctcatttggagaatatgtcttatggacagctacaggcg 447
Query: 408 gtctccgctgtgcctgctgagggttttgggtccgatca 445
|| || ||||| || |||||| |||||| | ||||||
Sbjct: 448 gtttctgctgttccacctgaggcttttggctgcgatca 485