Jatropha Genome Database
- JcCA0077051.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0077051.10 + phase: 0 /pseudo/partial
(1225 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29904.m002961 WD-repeat protein, putative 1388 0.0
30204.m001768 WD-repeat protein, putative 119 4e-26
30190.m010867 WD-repeat protein, putative 60 3e-08
>29904.m002961 WD-repeat protein, putative
Length = 2349
Score = 1388 bits (700), Expect = 0.0
Identities = 1005/1105 (90%), Gaps = 5/1105 (0%)
Strand = Plus / Plus
Query: 32 cagaataatcggaaaaggaaaggtaccttcatcttctggacctgctaatagtactggtac 91
|||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 1102 cagaataatcggaaaaggaaaggt-cctacatcttctggtcctgctaatagtactggtac 1160
Query: 92 aggaaacactgtgggccccttctcctaattctcagccatcaactccgtcaactcatactc 151
|||||||||||| ||||| | |||||||||| ||||||||||| |||||||||||||
Sbjct: 1161 aggaaacactgtaggccctt----ctaattctcaaccatcaactccttcaactcatactc 1216
Query: 152 ctggtgatggaatttccacagctggcaatttacagcatgtcaatagcatgtcgaaaggca 211
||||||| |||||||| || || |||||| | |||||||||||||||||| | |||||||
Sbjct: 1217 ctggtgagggaatttctacggcaggcaatgtgcagcatgtcaatagcatgccaaaaggca 1276
Query: 212 tgatgatgtacggtgctgatggaacaggagctcttgcatcatcaacaaatcagctggaag 271
|||||||||| ||| |||||||||||||| ||||||||||||||||||| || ||||||
Sbjct: 1277 tgatgatgtatggtactgatggaacaggaactcttgcatcatcaacaaaccaattggaag 1336
Query: 272 acattgaacattttggagatgttggctccttggatgataatgttgaatcttttctctcac 331
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 1337 acattgaacattttggagacgtaggctccttggatgataatgttgaatcttttctctcac 1396
Query: 332 atgatgatggagatggaagggatttgtttagcacattgaaaaggaatacttctgaacatg 391
|||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 1397 atgatgatggagatggaagggatttgttcagcacgttgaaaaggaatccttctgaacatg 1456
Query: 392 ctgcagaagcttccaagggtttctccttcaatgaagttggttctatacgtaaaagcaatg 451
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1457 cagcagaagcttccaagggtttctccttcaatgaagttggctctatacgtaaaagcaatg 1516
Query: 452 gaaaagttgtttgctgtcatttctctacagatggaaagttgttggccagtgctggacatg 511
| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 1517 gtaaagttgtttgctgccatttctctacagatgggaagttattggccagtgctgggcatg 1576
Query: 512 acaagaaggttgttatttggaacatggaaactctgcaaactgaatgcactcctgaagaac 571
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1577 acaagaaggttgttctttggaacatggaaactctgcaaacagaatgcactcctgaagaac 1636
Query: 572 acaaccacataattacagatgttcgtttcagaccaaatacaactcagctggcaacatctt 631
|||||||||||||||| || |||||||||||||||| |||||||||| ||||||||||||
Sbjct: 1637 acaaccacataattactgacgttcgtttcagaccaagtacaactcagttggcaacatctt 1696
Query: 632 catttgatacaagcattcgactctggaatgctgcagaaccaagatattccttgcagacat 691
||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 1697 catttgatacaagtgttcgactctgggatgctgcagaaccaagatattctttgcagacat 1756
Query: 692 atgccgggcatgcctcacatgtgatgtctctagacttccacccaaagaagaatgatcttt 751
|| | |||||| |||||||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 1757 atactgggcatacctcacatgtaatgtctcttgacttccaccccaagaagaatgaccttt 1816
Query: 752 tctgttcttgcgatggtaacaatgagatacgcttctggaatatcaatcagtattcttcca 811
|||| || || ||||||||||| || ||||| |||||||| |||||||||||||||| ||
Sbjct: 1817 tctgctcgtgtgatggtaacaacgaaatacggttctggaacatcaatcagtattcttgca 1876
Query: 812 cccgtatatccaaggggggtaccgcacaggttagatttcagccaaggattggacatctac 871
|||| ||||||||||| |||| || || || || |||||||||||||||||||||||||
Sbjct: 1877 cccgcatatccaagggaggtattgcgcaagtaaggtttcagccaaggattggacatctac 1936
Query: 872 tggctgcagcagcagagaatactgtgtccatctttgatgttgaggcagatagacagacac 931
| |||||||||||||||||| ||| |||||||||||||||||| | || || || || |
Sbjct: 1937 tagctgcagcagcagagaatgttgtatccatctttgatgttgagactgacaggcaaacgc 1996
Query: 932 actcgttacagggtcaccccactgaggtacactctgtttgttgggatgtaaatggagatt 991
| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1997 attcgttacagggtcactccactgaggtacactctgtctgttgggatgtaaatggagatt 2056
Query: 992 acttggcatccgtcagtcaagagtctgtccgagtgtggtcattggcctcaggagagtgca 1051
|||| || || ||||||||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 2057 acttagcctctgtcagtcaagagtctgtccgagtctggtcactggcctcaggagaatgca 2116
Query: 1052 ttcacgaactgagttccagtgggaacaagttccattcttgtgttttccatccaagttact 1111
|||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| || |
Sbjct: 2117 ttcatgaacttagttccagcggaaataagttccattcttgtgttttccacccaagctatt 2176
Query: 1112 ccactctcttggtcattgggggcta 1136
||||||| |||||||| || |||||
Sbjct: 2177 ccactcttttggtcataggaggcta 2201
>30204.m001768 WD-repeat protein, putative
Length = 2301
Score = 119 bits (60), Expect = 4e-26
Identities = 93/104 (89%)
Strand = Plus / Plus
Query: 1027 tggtcattggcctcaggagagtgcattcacgaactgagttccagtgggaacaagttccat 1086
||||| ||||||||||| ||||||||||| || || ||||||| ||||||| |||| |||
Sbjct: 2044 tggtctttggcctcaggggagtgcattcaggagctcagttccaatgggaaccagtttcat 2103
Query: 1087 tcttgtgttttccatccaagttactccactctcttggtcattgg 1130
|| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 2104 tcctgtgttttccatccaagttactcaactctcttggtgattgg 2147
Score = 99.6 bits (50), Expect = 4e-20
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 462 ttgctgtcatttctctacagatggaaagttgttggccagtgctggacatgacaagaaggt 521
|||||||||||| ||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1533 ttgctgtcatttttcttcagatggaaagttgctagccagtgctggacatgacaagaaggt 1592
Query: 522 tgttatttggaacatgga 539
||| | |||||||||||
Sbjct: 1593 tgtcctatggaacatgga 1610
Score = 60.0 bits (30), Expect = 3e-08
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 63 tcttctggacctgctaatagtactggtacaggaaacactgtgggccccttctcctaattc 122
||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| |||| |||
Sbjct: 1144 tcttctggaccagctaacagtactggtacagggaacacagtggg-tccttcgcctagttc 1202
Query: 123 tcagccatcaactc 136
|| ||||||||||
Sbjct: 1203 tcctccatcaactc 1216
>30190.m010867 WD-repeat protein, putative
Length = 1965
Score = 60.0 bits (30), Expect = 3e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 496 gccagtgctggacatgacaagaaggttgttatttggaacatggaaa 541
||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct: 1168 gccagtgctggacatgacaagaaggttttcttttggaatatggaaa 1213