Jatropha Genome Database
- JcCA0076141.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0076141.10 + phase: 2 /pseudo/partial
(1135 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30040.m000265 nuclear matrix protein, putative 1213 0.0
>30040.m000265 nuclear matrix protein, putative
Length = 1827
Score = 1213 bits (612), Expect = 0.0
Identities = 1011/1145 (88%), Gaps = 11/1145 (0%)
Strand = Plus / Plus
Query: 1 aggcaaacaaaattagcccaagatgagaatcaattgttagaaaatatgcttcggactttg 60
|||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 88 aggcaaacaaaattggcacaagatgagaatcaattattagaaaatatgctccggacttta 147
Query: 61 cttcaggagctagtgc-----gcagt-----caggggagcaaataatgctgtatgggcaa 110
||||||||||| ||| ||||| |||| || || |||||||| |||||||||
Sbjct: 148 cttcaggagcttgtggcttctgcagtacattcaggagaacagataatgctatatgggcaa 207
Query: 111 tcagttgatgatgcggaaaactctcagggtcaaattcctcatctgttagatgttgtgttg 170
||||||||||| | |||||| ||||||||||||||||||| ||| |||||||||||| ||
Sbjct: 208 tcagttgatgagggggaaaaatctcagggtcaaattcctcgtcttttagatgttgtgctg 267
Query: 171 tatctttgtgagagagaacatgttgaggggggtatggtattccagttgttggaagacttg 230
|||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||
Sbjct: 268 catctttgtgagagagaacatgtagagggtggtatgatattccagctgttggaagacttg 327
Query: 231 acagaaatgtctacaatgagaaattgcaaagatgtttttggttatattgagagtaaacaa 290
||||||||||| ||||||| ||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 328 acagaaatgtccacaatgaaaaattgccaggatatttttggttatattgagagtaaacaa 387
Query: 291 gatatacttgggaagcaagaactttttgctcgtggaaaacttgtgatgttgagaacctgt 350
|||||||| |||||||||||| | || ||||||||||||||||||||||||||||| |||
Sbjct: 388 gatatactagggaagcaagaattgttcgctcgtggaaaacttgtgatgttgagaacgtgt 447
Query: 351 aaccaacttcttcgtcgtctttcaaaggcaaatgatgtcgtgttctgtggacgaattcta 410
|| ||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct: 448 aatcaactccttcgtcgtctttcaaaggcaaatgatgttgtgttttgcggacgaattctc 507
Query: 411 atgtttctggcacannnnnnnccattatctgaacgttcagctgtaaatataaaaggagtt 470
|||||||||||||| ||||| ||||| |||||||| || || ||||||||||||
Sbjct: 508 atgtttctggcacatttttttccattgtctgagcgttcagcggtgaacataaaaggagtt 567
Query: 471 ttcaacacatcaaatgacactaaatatgagaaagacccgcctgctggcatctctatcgat 530
|| |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||| | ||
Sbjct: 568 tttaacacatcaaatgagactaagtatgagaaagacccacctgcaggcatttctgttgac 627
Query: 531 ttcaacttctataaaaccttatggagtttacag-aattcttttgtaaccctgtttctcta 589
||||||||||| |||||||| |||||||||||| || |||||| ||||||| | |||||
Sbjct: 628 ttcaacttctacaaaaccttgtggagtttacaggaaaacttttgcaaccctgctcctcta 687
Query: 590 acactcgctccaaccaagtggcataaatttactgccactttaatggttgtattgaatact 649
|| || |||||||| |||||||||||||||||| | | ||| |||||||| |||||||||
Sbjct: 688 acgcttgctccaactaagtggcataaatttacttctagtttgatggttgtgttgaatact 747
Query: 650 tttgatgctcagcccttgagtgaggaggaaggaaatgctaacaacttggaggaagaggca 709
||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 748 tttgaagctcagccattgagcgaggaagaaggagatgctaacaacttggaggaagaggca 807
Query: 710 gcaacttttaacataaagtatctcacaagcagtaaactaatgggcttagagttaaaagat 769
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 808 gcaacttttaacataaaatatctcacaagtagtaaactaatgggtttagagttaaaagat 867
Query: 770 ccaagttttcgtcgccacattcttgtccagtgcctgatacttttcgactatcttaaggct 829
|| |||||||| |||||||||||||| |||||||| ||| | ||||||||||||||||||
Sbjct: 868 cctagttttcgacgccacattcttgtgcagtgccttatattgttcgactatcttaaggct 927
Query: 830 ccaggaaagaatgacaaagatttgacatctgaaagcatgaaagaagaaataaaaacttgt 889
|||||||| ||||| || |||| ||||||||||||||||||||||| |||| ||||||
Sbjct: 928 ccaggaaaaaatgataaggattcaacatctgaaagcatgaaagaagatataagaacttgc 987
Query: 890 gaggagcgtgtgaagaaactacttgaaatgactccacctaaaggaaaggattttcttcac 949
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 988 gaggagcgtgtaaagaaactacttgaaatgactccacccaaaggaaaggatttccttcaa 1047
Query: 950 atggtcgagcatatactagaacgtgaaaagaattgggtgtggtggaaacgtgacggttgc 1009
| | | |||||| | |||||||| ||||||||||||||||| |||||||| || ||||||
Sbjct: 1048 aagattgagcatgtgctagaacgggaaaagaattgggtgtgttggaaacgagatggttgc 1107
Query: 1010 cctgcatttgaaaaacagccaatagagaataaaatggtccaagatggagttaaaaaacgt 1069
| |||||||||| |||||||||||||| |||| ||||||| ||| ||||||||||
Sbjct: 1108 caaccatttgaaaagcagccaatagagaacaaaactatccaagagggaagtaaaaaacgt 1167
Query: 1070 aagccaaggtggagactggggaataaagaactctctcaattatggaagtgggcagatcag 1129
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 1168 aagccaaggtggagactggggaataaagaactctctcagttgtggaagtgggcagatcaa 1227
Query: 1130 aatcc 1134
|||||
Sbjct: 1228 aatcc 1232