Jatropha Genome Database

JcCA0076121.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0076121.30 - phase: 2 /pseudo/partial
         (862 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003458 hypothetical protein                                    202   3e-51

>29822.m003458 hypothetical protein
          Length = 1101

 Score =  202 bits (102), Expect = 3e-51
 Identities = 251/300 (83%), Gaps = 3/300 (1%)
 Strand = Plus / Plus

                                                                        
Query: 561  gttctaccaactgccagtttcaagctcttattgaatacttactgggtatgaaattttcta 620
            ||||||||||||||||||||||||| ||||||||||  ||| | || |||||||| ||||
Sbjct: 800  gttctaccaactgccagtttcaagcacttattgaatgtttattaggcatgaaattatcta 859

                                                                        
Query: 621  ctgttattcaaagtgatgatagaatatgcatttcagctctgcatcaatcaagtggttact 680
            ||| || ||||| ||| || |   ||||  ||||||||||||||||||||||||||||||
Sbjct: 860  ctgctaatcaaactgaagaga---tatgtgtttcagctctgcatcaatcaagtggttact 916

                                                                        
Query: 681  cgttcattctaacatgggtagacaaggacagtgcaaaagaaccagagctactataccgtg 740
            |||| | ||||||||||||  | || |    || | ||||||| ||| | ||||| ||| 
Sbjct: 917  cgtttagtctaacatgggtgaagaaagctgctggacaagaacctgagttgctatatcgtc 976

                                                                        
Query: 741  catcgacactagggacatttgagagggtagcaccagagtggatgagatcggttctaatgt 800
            | || ||  |||||||||| ||||||||||| ||||||||||||||||| ||  ||| ||
Sbjct: 977  cgtcaaccttagggacattcgagagggtagcgccagagtggatgagatcagtcataaagt 1036

                                                                        
Query: 801  tcagcacaagcatgtgtcctatcttcttcgaaaggatagcccgtgttatcaagatgcatt 860
            | ||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct: 1037 ttagcaccagcatgtgtcctatcttcttcgaaagggttgccagtgttatcaagatgcatt 1096



 Score = 52.0 bits (26), Expect = 6e-06
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                       
Query: 361 aaagcgcagccgaaaagctaggactgagatggacgctgttagtactcccggtcaaagtta 420
           ||||||||||||| |||||||  |||||| ||| |   ||| |||||| | || |||  |
Sbjct: 483 aaagcgcagccgagaagctagtgctgagaaggaaggctttattactcctgatcgaagcaa 542

                                     
Query: 421 tcaagatgatttgttggtaagagaat 446
           ||||||||| ||||||||||||||||
Sbjct: 543 tcaagatgacttgttggtaagagaat 568