Jatropha Genome Database

JcCA0076121.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0076121.20 - phase: 0 /pseudo
         (546 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006481 ubiquitin-conjugating enzyme E2 C, putative             607   e-173

>30169.m006481 ubiquitin-conjugating enzyme E2 C, putative
          Length = 540

 Score =  607 bits (306), Expect = e-173
 Identities = 476/532 (89%), Gaps = 3/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  ttaacgggtaccaaggcaacacacccgtagccactccggcggcgacccaatcgaagcaga 70
           |||| ||||||||||||||||||||||| ||   | |||| | | ||| |||||||||||
Sbjct: 11  ttaatgggtaccaaggcaacacacccgtcgc---ttcggcaggggccccatcgaagcaga 67

                                                                       
Query: 71  ctttgccaacggtgaacaccgttgatacacaatctgtgcttaagcggttgcaatctgaat 130
           || |||| || ||||| || ||||| || || ||||| ||||| ||||||||||||||||
Sbjct: 68  ctgtgccgactgtgaagactgttgacactcagtctgttcttaaacggttgcaatctgaat 127

                                                                       
Query: 131 taatgtcactaatgatgagtggagaatctgggatatctgcgtttcctgaggaggataaca 190
           ||||| || | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 128 taatggcattgatgatgagtggagaatctgggatatctgcctttcctgaggaggataaca 187

                                                                       
Query: 191 tattctgctggaaaggaacaatcactggaagtaaagatacagtttttgagggaacagaat 250
           |||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||| ||||
Sbjct: 188 tattctgctggaaaggaacaattacaggaagcaaagacacagtttttgaaggaactgaat 247

                                                                       
Query: 251 acaagctatctctgtctttcccaaatgactatcccttcaagtcaccaaaggtgaaatttg 310
           |||||||||| || ||||||||||||||||||||||||||| | ||||||||||| || |
Sbjct: 248 acaagctatccctttctttcccaaatgactatcccttcaagcctccaaaggtgaagttcg 307

                                                                       
Query: 311 aaaccagctgcttccatcctaatgtggatgtctatggcaacatatgcttggacattcttc 370
           ||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 308 aaaccagctgctttcatcctaatgtggatgtttatggaaacatttgcttggacatccttc 367

                                                                       
Query: 371 aggataaatggtcatctgcttacgatgttaggacaatactgctgtctatccagagtctac 430
           |||||||||||||||| ||||| |||||| ||||||||||  | |||||||||||||| |
Sbjct: 368 aggataaatggtcatcggcttatgatgttcggacaatactcatatctatccagagtctgc 427

                                                                       
Query: 431 ttggagagcccaatataagttcgcctctaaacactcaagcagctcaactttggagcaatc 490
           |||||||||| |||||||| || ||| ||||||||||||| |||||||| ||||||||||
Sbjct: 428 ttggagagccaaatataagctcacctttaaacactcaagcggctcaactatggagcaatc 487

                                                               
Query: 491 aagaagaatataggaagatggtggagaagttatacaagcctccaagtgcata 542
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 488 aagaagaatatagaaagatggtggagaagttgtacaagcctccaagtgcata 539