Jatropha Genome Database

JcCA0076121.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0076121.10 + phase: 0 /pseudo/partial
         (435 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006482 thump domain protein, putative                          424   e-118

>30169.m006482 thump domain protein, putative
          Length = 1149

 Score =  424 bits (214), Expect = e-118
 Identities = 382/439 (87%), Gaps = 8/439 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    ttgtttttgttcaaatgcgcaagagagatggagacccttctcctaaggatattgtacagc 60
            |||| ||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct: 704  ttgtctttgtccaaatgcgcaagagagatggggacccttctcctaaagatattgcacagc 763

                                                                        
Query: 61   atatgatgacatttgctgcatcaacaaggaaacacatgtcaaggttcatattaagagtgc 120
            | || |||||||  |||||||||||||||||||||||||||||||||||  |||||||  
Sbjct: 764  acattatgacatcagctgcatcaacaaggaaacacatgtcaaggttcatcctaagagttt 823

                                                                        
Query: 121  tgccagttgaagttgcatgctatgcttctgaagaggaaatttcaaaagcaatggcatcaa 180
            | || || ||| | |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 824  tacccgtggaaatcgcatgctatgcttcagaagaggaaatttcaaaagcaatggcaccaa 883

                                                                        
Query: 181  ttgtggcaaagtattttcctgtggatgctcaagacccgcaaaagactg--------tatg 232
            |||||| ||| ||||||||||| ||| | ||| |||| || |||  ||        ||||
Sbjct: 884  ttgtggaaaaatattttcctgtcgatacacaaaacccacagaagtttgcagtgctttatg 943

                                                                        
Query: 233  aagctcgtgcaaacactggaattgacaggatgaaaattataaattcagtggcaaaatctg 292
            ||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 944  aagctcgtgcaaacactggcatcgacaggatgaagattataaattcagttgcaaaatctg 1003

                                                                        
Query: 293  ttcctggaccgcataaagtcgatcttagcaatcctgagaagacaattgtagttgaagttg 352
            |||||||||| |||||||| ||||||| ||||||||| |||||||| ||||||||| |||
Sbjct: 1004 ttcctggaccccataaagttgatcttaacaatcctgacaagacaatcgtagttgaaattg 1063

                                                                        
Query: 353  ttaagactgtatgcttgattggggttgttgagaagtacaaggagttggccaagtacaaca 412
            ||||||| ||||||||||||||  ||||||| || ||||||| ||||||||| |||||| 
Sbjct: 1064 ttaagaccgtatgcttgattggccttgttgaaaactacaaggggttggccaaatacaacc 1123

                               
Query: 413  tgaggcagctcacatcacc 431
            |||||||||| ||||||||
Sbjct: 1124 tgaggcagcttacatcacc 1142