Jatropha Genome Database
- JcCA0075511.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0075511.30 - phase: 0
(540 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28952.m000016 nucleic acid binding protein, putative 490 e-138
29780.m001390 nucleic acid binding protein, putative 194 4e-49
30170.m014220 nucleic acid binding protein, putative 58 6e-08
>28952.m000016 nucleic acid binding protein, putative
Length = 1329
Score = 490 bits (247), Expect = e-138
Identities = 394/443 (88%)
Strand = Plus / Plus
Query: 55 agtaacaacaataagaagaaaagaagaccagcaggaactccagatccagatgctgaagtg 114
|||||||| ||||||| ||| ||||| || |||||||| |||||||| ||||| ||||||
Sbjct: 67 agtaacaataataagaggaagagaaggcctgcaggaacaccagatccggatgcagaagtg 126
Query: 115 gtttctctatcgccaaaaacactgctcgaatcggaccgttacgtatgtgagatctgtaat 174
||||| ||||| || ||||| || || ||||||||||| || |||||||||||||| ||
Sbjct: 127 gtttccctatcccctaaaacgctactggaatcggaccgatatgtatgtgagatctgcaac 186
Query: 175 caagggtttcagagagaccaaaacctacagatgcacagaaggagacataaggtcccatgg 234
||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 187 caagggtttcaaagagatcaaaacctacagatgcacaggcggagacataaggtcccatgg 246
Query: 235 aagttactaaagagagagagtccggtggtgaggaagagagtttttgtttgtccagagcct 294
|||||||||||| |||||| ||| ||||| ||||| ||||||||||| || || || |||
Sbjct: 247 aagttactaaagcgagagactcctgtggttaggaaaagagtttttgtgtgcccggaacct 306
Query: 295 tcttgcttgcaccatgatccatgtcatgcccttggtgatcttgtcgggataaagaagcac 354
|||||| ||||||||||||||||| || |||||||||||||| ||||| |||||||||
Sbjct: 307 agttgcttacaccatgatccatgtcacgcgcttggtgatcttgttgggattaagaagcac 366
Query: 355 tttagaagaaaacatagcaatcacaaacagtgggtctgtgataaatgctccaaagcttat 414
|||||||| ||||| || ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 367 tttagaaggaaacacagtaatcacaaacaatgggtctgtgaaaaatgctctaaagcttat 426
Query: 415 gctgttcaatctgattttaaagcccatctcaaaacttgtggcaccagaggccattcttgc 474
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 427 gctgttcaatctgattataaggcccatctcaaaacttgtggcaccagaggccattcctgc 486
Query: 475 gattgcggccgagttttctcaag 497
||||| ||||| |||||||||||
Sbjct: 487 gattgtggccgtgttttctcaag 509
>29780.m001390 nucleic acid binding protein, putative
Length = 1434
Score = 194 bits (98), Expect = 4e-49
Identities = 326/402 (81%)
Strand = Plus / Plus
Query: 72 gaaaagaagaccagcaggaactccagatccagatgctgaagtggtttctctatcgccaaa 131
|||||||| ||| ||||||||||||||||||||||| || || || ||| | |||||||
Sbjct: 126 gaaaagaaaacctgcaggaactccagatccagatgcagaggttgtatctttgtcgccaag 185
Query: 132 aacactgctcgaatcggaccgttacgtatgtgagatctgtaatcaagggtttcagagaga 191
|| | || |||||||| | |||||||||||||||||||| ||||||||||| |||||
Sbjct: 186 gactttactggaatcggatagatacgtatgtgagatctgtaaccaagggtttcaaagaga 245
Query: 192 ccaaaacctacagatgcacagaaggagacataaggtcccatggaagttactaaagagaga 251
||| ||| |||| ||||| ||||| || ||||| || |||||||| || | || |||||
Sbjct: 246 ccagaacttacaaatgcatagaagaaggcataaagtaccatggaaattgttgaaaagaga 305
Query: 252 gagtccggtggtgaggaagagagtttttgtttgtccagagccttcttgcttgcaccatga 311
| | | |||| ||| ||||| | ||||||||||||||| ||| |||||||||||
Sbjct: 306 aacacaagaagtgaagaaaagagtctatgtttgtccagagccaagttgtttgcaccatga 365
Query: 312 tccatgtcatgcccttggtgatcttgtcgggataaagaagcactttagaagaaaacatag 371
|| || ||||| | || |||||||| || |||||||| |||||||| || ||||| ||
Sbjct: 366 cccttgccatgctttaggagatcttgttggtataaagaaacactttaggaggaaacacag 425
Query: 372 caatcacaaacagtgggtctgtgataaatgctccaaagcttatgctgttcaatctgattt 431
|||||||| |||||||| ||||| ||||| || |||| ||||||||| ||||||||||
Sbjct: 426 taatcacaagcagtgggtttgtgagaaatgttctaaaggttatgctgtccaatctgatta 485
Query: 432 taaagcccatctcaaaacttgtggcaccagaggccattcttg 473
|||||||| || || ||||||||||| || || ||||||||
Sbjct: 486 caaagcccaccttaagacttgtggcactaggggtcattcttg 527
>30170.m014220 nucleic acid binding protein, putative
Length = 1509
Score = 58.0 bits (29), Expect = 6e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 94 ccagatccagatgctgaagtggtttctctatcgccaaaaacactg 138
||||||||||||||||||||| || || |||| ||||||||||||
Sbjct: 142 ccagatccagatgctgaagtgattgctttatcaccaaaaacactg 186