Jatropha Genome Database

JcCA0075421.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075421.20 - phase: 0 /pseudo
         (1914 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014178 hypothetical protein                                    141   2e-32
30170.m014179 conserved hypothetical protein                           98   2e-19

>30170.m014178 hypothetical protein
          Length = 1326

 Score =  141 bits (71), Expect = 2e-32
 Identities = 163/194 (84%), Gaps = 6/194 (3%)
 Strand = Plus / Plus

                                                                        
Query: 1483 caacaggcccaacttcagttgccttcccatgtcagcagcccatattgtgttcctcatgta 1542
            |||||||||||||||||||| ||| ||||| ||||||||||||| |||| ||||||||  
Sbjct: 895  caacaggcccaacttcagttacctccccatttcagcagcccatactgtggtcctcatgcc 954

                                                                        
Query: 1543 agtcccaaggccatgacaaagcag------caacagcaacggctctgggcggcccagtta 1596
            | |||||| ||| |||||||||||      ||||| |||||  | |||||||||||||| 
Sbjct: 955  aatcccaaagccttgacaaagcagcaacaacaacaacaacgtttttgggcggcccagttg 1014

                                                                        
Query: 1597 gcagctcagtacaggaataatggaacttccacagccacaactcagttcccaggctggcaa 1656
            |||||||||| |||||||||||| |||||| || ||   |||||||| ||| ||||||||
Sbjct: 1015 gcagctcagttcaggaataatgggacttcctcaaccgtgactcagtttccaagctggcaa 1074

                          
Query: 1657 agtggaaggcaaga 1670
            | ||||||||||||
Sbjct: 1075 aatggaaggcaaga 1088



 Score =  129 bits (65), Expect = 7e-29
 Identities = 161/191 (84%), Gaps = 4/191 (2%)
 Strand = Plus / Plus

                                                                        
Query: 930  tggaaaggtttccaaagtttcaactgataggaggtcatggaagaggtgtgcggctcatgg 989
            ||||||| |||| |||||| |||||||||| ||||| |||||||||||||| ||||||| 
Sbjct: 351  tggaaagctttctaaagttccaactgatagaaggtcgtggaagaggtgtgcagctcatgt 410

                                                                        
Query: 990  ttacataagccatctcatccgggctttgcagacgt--ctgatggcaaagaaagcttgcca 1047
            ||||||||||| |||||| ||||  |   ||| ||  ||||  ||||||||||||||| |
Sbjct: 411  ttacataagccgtctcattcggg--tactagaagtccctgaaagcaaagaaagcttgcaa 468

                                                                        
Query: 1048 gtgcctcagaaccaactgagacctcatgaaattctaaagcaaggcgtactcatgacaata 1107
             | |||   || ||||||||||| ||||||||  |||||||||| |||||||||||||||
Sbjct: 469  ctcccttcaaatcaactgagaccacatgaaatattaaagcaaggtgtactcatgacaata 528

                       
Query: 1108 aatgacttcaa 1118
            |||||||||||
Sbjct: 529  aatgacttcaa 539


>30170.m014179 conserved hypothetical protein
          Length = 261

 Score = 97.6 bits (49), Expect = 2e-19
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                      
Query: 13 atgatagaaacagacaagagtcgagacgtgaggcgtggagcgagtcggttttcgcgacag 72
          ||||||||| | |||||||||||||||||||||||||||||||||||||| | | |||| 
Sbjct: 1  atgatagaagcggacaagagtcgagacgtgaggcgtggagcgagtcggttcttgagacat 60

                       
Query: 73 attaagcaatctg 85
          |||||||||||||
Sbjct: 61 attaagcaatctg 73