Jatropha Genome Database

JcCA0075411.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075411.40 - phase: 2 /partial
         (180 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014108 40S ribosomal protein S9, putative                      248   9e-66
29822.m003493 40S ribosomal protein S9, putative                      113   3e-25
29813.m001450 40S ribosomal protein S9, putative                      105   8e-23

>30147.m014108 40S ribosomal protein S9, putative
          Length = 594

 Score =  248 bits (125), Expect = 9e-66
 Identities = 161/173 (93%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaaggcaggtggtgaatatcccatcttttatggtgagggttgattcacaaaagcacatt 64
           ||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||
Sbjct: 415 ggaaggcaggtggtgaacatcccatctttcatggtgaggattgattcacagaagcacatt 474

                                                                       
Query: 65  gatttctctttgacaagtccattcggtggcggtcgcccaggaagagtgaagagaaagaac 124
           || ||||| |||||||||||||||||||| || || || |||||||||||||||| ||||
Sbjct: 475 gacttctcattgacaagtccattcggtggtgggcgtcctggaagagtgaagagaaggaac 534

                                                                
Query: 125 cagagggcagctagcaagaaggcttctggtggagatggagacgaagaggatga 177
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 535 cagagggcagctagcaagaaggcttctggtggagatggagatgaagaggatga 587


>29822.m003493 40S ribosomal protein S9, putative
          Length = 591

 Score =  113 bits (57), Expect = 3e-25
 Identities = 123/145 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttggaaggcaggtggtgaatatcccatcttttatggtgagggttgattcacaaaagca 60
           |||||| ||||| || || ||||| |||||||| ||||||||||| || || || || ||
Sbjct: 411 ggttgggaggcaagttgttaatataccatctttcatggtgagggtggactcccagaaaca 470

                                                                       
Query: 61  cattgatttctctttgacaagtccattcggtggcggtcgcccaggaagagtgaagagaaa 120
           ||||||||||||| | |||||||||||||| || || || || ||| |||| ||||||||
Sbjct: 471 cattgatttctctcttacaagtccattcggaggtggccgtcctggacgagtaaagagaaa 530

                                    
Query: 121 gaaccagagggcagctagcaagaag 145
           |||||| ||||| ||||||||||||
Sbjct: 531 gaaccaaagggctgctagcaagaag 555


>29813.m001450 40S ribosomal protein S9, putative
          Length = 591

 Score =  105 bits (53), Expect = 8e-23
 Identities = 101/117 (86%)
 Strand = Plus / Plus

                                                                       
Query: 29  tcttttatggtgagggttgattcacaaaagcacattgatttctctttgacaagtccattc 88
           ||||| ||||||||||| || |||||||||||||||||||||||  | |||||||| |||
Sbjct: 439 tctttcatggtgagggtcgactcacaaaagcacattgatttctcccttacaagtcctttc 498

                                                                    
Query: 89  ggtggcggtcgcccaggaagagtgaagagaaagaaccagagggcagctagcaagaag 145
           ||||| || ||||| || ||||||||||||||||| || || || ||||| ||||||
Sbjct: 499 ggtggtgggcgccctggtagagtgaagagaaagaatcaaagagctgctagtaagaag 555