Jatropha Genome Database

JcCA0075411.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075411.20 + phase: 0 
         (279 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014106 DNA binding protein, putative                           103   5e-22

>30147.m014106 DNA binding protein, putative
          Length = 270

 Score =  103 bits (52), Expect = 5e-22
 Identities = 142/172 (82%)
 Strand = Plus / Plus

                                                                       
Query: 50  atgagatcattgatctcattttgaagctacaagctttgctacctcacattaatcaaaggc 109
           ||||| ||| ||||||| | ||||| |||||||| || ||||||||  |||| |||||||
Sbjct: 44  atgagctcaatgatctcgtcttgaaactacaagcattactacctcaacttaaccaaaggc 103

                                                                       
Query: 110 aggactcaagggtatcggcatcgaaaattttgaaggaaacgtgcagctatatcgggaagc 169
           |||  || |||||||| | ||| ||||| ||| |||| || |||||||||||| |||  |
Sbjct: 104 aggcatccagggtatcagtatcaaaaatcttgcaggagacatgcagctatatcaggagtc 163

                                                               
Query: 170 tacaaagagaggtggatgacttgagcgaaaaactatctcaaatgctggattc 221
           ||||||| |||| |||||| || || ||||||||||||||| || |||||||
Sbjct: 164 tacaaagtgaggcggatgatttaagtgaaaaactatctcaactgttggattc 215