Jatropha Genome Database

JcCA0074951.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0074951.10 + phase: 2 /pseudo
         (454 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27524.m000291 conserved hypothetical protein                          357   4e-98

>27524.m000291 conserved hypothetical protein
          Length = 573

 Score =  357 bits (180), Expect = 4e-98
 Identities = 363/429 (84%), Gaps = 20/429 (4%)
 Strand = Plus / Plus

                                                                       
Query: 43  tgtgtctacaactctgatgtggcaactggttatggagtgggtgctttcttatttcttctc 102
           |||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||| || 
Sbjct: 139 tgtgtctacaactctgatgttgcaactggttatggagtaggctctttcttatttctcctt 198

                                                                       
Query: 103 tcgagtgaatcactgctaatgggtgtaacaaagtgcatgtgttttggaagaccattagct 162
           || |||||||||||  | |||||||| |||||||| ||||||||||||| ||||||||| 
Sbjct: 199 tcaagtgaatcactattgatgggtgtgacaaagtgtatgtgttttggaataccattagcc 258

                                                                       
Query: 163 ccaggtggaaatcgagcatggtctataatatattttgtctcatcatg------------- 209
           || |||||  ||||||| ||||| || || || ||| ||||||||||             
Sbjct: 259 ccgggtggggatcgagcttggtccatcatttactttatctcatcatggttgacttttctg 318

                                                                       
Query: 210 -------aagcatgtctacttgcaggtgcaacaaaaaatgcataccacaccaagtacagg 262
                  ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 319 gttgcagaagcatgtctaattgcaggtgcaacaaaaaatgcataccacactaagtacagg 378

                                                                       
Query: 263 ggaatgatatatgctcaaaatttctcatgtgaaacattgcgtaagggtgtttttgttgct 322
           || ||||||||||||||||||||||| |||||| ||||| | || ||||||||| |||||
Sbjct: 379 gggatgatatatgctcaaaatttctcgtgtgaatcattgaggaaaggtgtttttattgct 438

                                                                       
Query: 323 ggagctgtgtttgtagttgcaacaatgattcttaatgtatactactacatgtatttctcc 382
           ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 439 ggagcagtgtttgtagttgcaacaatggttcttaatgtatactactatatgtatttctcc 498

                                                                       
Query: 383 aaggctactgcccctcaggcagccagcaaggcaaatcgtactagttcgaatgtcgggatg 442
           |||||||||||||||||| |||||   || ||||| || || ||||| | ||||||||||
Sbjct: 499 aaggctactgcccctcagacagcccataaagcaaagcgcaccagttcaagtgtcgggatg 558

                    
Query: 443 gctgggtat 451
            ||||||||
Sbjct: 559 actgggtat 567